BtaINT0128623 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004510 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr11:104630781-104631154:-
Coord C1 exon
chr11:104631031-104631154
Coord A exon
chr11:104630882-104631030
Coord C2 exon
chr11:104630781-104630881
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CACCTGTGCTCTGCCCGCAGGGG
3' ss Score
11.56
Exon sequences
Seq C1 exon
ATCATCGAGAACTGCCCGGTGACCGGGATCCGTGTACGGACAGACGATTTTGGGGTGCGGCGGGTCGCAGCTGTGGAGACAGAACATGGCTCTATCCGGACCCCCTGTGTGATCAACTGTGCAG
Seq A exon
GTGGGAAGGCGTTTCTCCTGCCTCCTGAGTGGCCACCCTGACTGTTCCCAAACCTGGCCTTGCTTAGGGGTGGGGGCACCCAGTGCCCGCCTGGCTGGCAGCCCCCGCCAGACGCCGGCAGGGCTCAGCCACCTGTGCTCTGCCCGCAG
Seq C2 exon
GGGTGTGGGCGCGCGCCGTGGGCAGGATGGCCGGCGTCAACGTCCCGCTGGTGGCCATGCACCACGCTTACGTCGTCACCGAGCGCATTGAGGGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004510:ENSBTAT00000005925:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.4=100)
A:
NA
C2:
PF0126619=DAO=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCGAGAACTGCCCGGT
R:
GATCCCCTCAATGCGCTCG
Band lengths:
222-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development