RnoINT0130712 @ rn6
Intron Retention
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5791201-5791572:-
Coord C1 exon
chr3:5791449-5791572
Coord A exon
chr3:5791302-5791448
Coord C2 exon
chr3:5791201-5791301
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
3' ss Seq
ACTTTCCACTCTGCCTCCAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTCATTGAAAACTGTGCAGTGACTGGCATCCGTGTGCGGACAGACGACTTTGGAGTGCGGCGGGTGACAGCTGTGGAGACTCAACATGGCTCCATCCAGACACCCTGCGTGGTCAACTGTGCAG
Seq A exon
GTGGAACGCTGCCCCTCTGACTCCCTCGGCTCGGGTCCCACCCACAAAGGGCGCCTTTCTGGGGCGGGAAGTCAGGATAGGCAGGGATTCTGAGGTGTTCTGTGCCCACTCGGGTAGCAGCTGAGTTACTTTCCACTCTGCCTCCAG
Seq C2 exon
GGGTGTGGGCGAGCTCCGTGGGCCGGATGGCTGGAGTGAAGGTCCCGCTGGTGGCCATGCACCATGCCTACGTTGTCACTGAGCGCATTGAGGGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916:ENSRNOT00000009555:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.4=100)
A:
NA
C2:
PF0126619=DAO=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTGCAGTGACTGGCA
R:
CTGGATCCCCTCAATGCGC
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]