GgaINT0125528 @ galGal4
Intron Retention
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7042334-7042671:-
Coord C1 exon
chr17:7042548-7042671
Coord A exon
chr17:7042435-7042547
Coord C2 exon
chr17:7042334-7042434
Length
113 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TGTGCTCTGTGTCCCCACAGGGG
3' ss Score
13.53
Exon sequences
Seq C1 exon
ATCATAGAGAACTGCCCCGTCACCGGCATCCAGGTCAGAACAGATGACTTTGGGGTGAAGAGGGTGCACGCAGTGGAGACAGCCCACGGGACCATCCAGACTCCCTGCGTGGTCAACTGTGCAG
Seq A exon
GTACGGATGGGACAGCTCTGCTTTGCACGGCGTGAGCCAGGGGTGCACCAAGCCCACGTCCCCCAGCTGATGTGCTCTGTGTGCCCCATCTGATGTGCTCTGTGTCCCCACAG
Seq C2 exon
GGGTGTGGGCGCGTGCCCTGGGCCGGCTGGCAGGTGTGCACGTGCCTCTGGTGGCGATGCATCACGCCTACGTGGTGACCGAACGCATTGAAGGTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855:ENSGALT00000004499:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.4=100)
A:
NA
C2:
PF0126619=DAO=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGAGAACTGCCCCGTCA
R:
ACCTTCAATGCGTTCGGTCAC
Band lengths:
218-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]