BtaINT0128950 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95938074-95938537:-
Coord C1 exon
chr11:95938364-95938537
Coord A exon
chr11:95938175-95938363
Coord C2 exon
chr11:95938074-95938174
Length
189 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCC
5' ss Score
5.35
3' ss Seq
CACTTTTCTCCTTTTTGCAGATC
3' ss Score
12.07
Exon sequences
Seq C1 exon
ATCAATCTCAACGAGGTAGCCTGTTCACTCTGTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGACTGTCAAGCATGCGTAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGACATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq A exon
GTACCCTACTACTATAACTGCACACTTAACAAAATGTACTATCCTGGTTTAAAATTGTTTAAATTGTTTGATGTAATGGTATTTGTTGAAGGTAGGAAAGTTGAGAAGGTTTTCCTGAACATTTCTTCCCTTTTGAAGTGTATTTTCCACTTAAGTATCCTTTTACTATCACTTTTCTCCTTTTTGCAG
Seq C2 exon
ATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTTCTCACGAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553:ENSBTAT00000020665:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
NA
C2:
PF120703=DUF3550=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTAGCCTGTTCACTCT
R:
GCATCCTCATGGTGGCTGAAC
Band lengths:
251-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development