BtaINT0128953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95966055-95966770:-
Coord C1 exon
chr11:95966675-95966770
Coord A exon
chr11:95966142-95966674
Coord C2 exon
chr11:95966055-95966141
Length
533 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
3' ss Seq
TTATCTCCTGTGTAAAACAGACA
3' ss Score
5.46
Exon sequences
Seq C1 exon
AGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAATTCCAGCAGCAGCATCG
Seq A exon
GTAAAGAATTTTTAAAGTTTTTTTTGTTAGTCACAGTTTTGACTGTTACTACCTCAGTGCTTTTTATCTCTTCGTGTATCTCATTTCATCTTTGTTACCAAAAGAAAATAAATTGATTTTTTCCCCCTATTTATTTAAGTTTTTCAAGTGTAATAGTATCTGACTTTTAAAGACAATATCATATTTGAAATGATTCAGATTAAGTAGGTAGGCAGATTCATGATTTCATCCTGAAATAGGTATTGTTTATTGGCCAAAGCTATTGGGGGAGGGGGTTGCTTCTAATTTCCATGAACGTAGCTCAGAGAAGTTTATTTTTGTATTTCAGTATACTCTAAATAGACACTTTATAAATGGTTTTTGAATTTGAGTGCTTATGTTAAAATCTCATGAAAAATTCATGAATTTCAGTTTATGTACTCAAAATTTCATGGTGAATTGCGTGATACTCTATCCTGTGAAATTAACACATTTGGTTATTTTTGAAATTTATAGTCTCTCATTTCTATTTTCTTATCTCCTGTGTAAAACAG
Seq C2 exon
ACAAGTCTTGGATAATCGGTACGGCTTGAAGCGGTGGCAAATAGGGGAAATTGCTTCTAAGATCGGGCAGCTCTACTACCATTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553:ENSBTAT00000020665:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.5=100)
A:
NA
C2:
PF120703=DUF3550=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development