BtaINT0129727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114659397-114660571:-
Coord C1 exon
chr5:114660467-114660571
Coord A exon
chr5:114659514-114660466
Coord C2 exon
chr5:114659397-114659513
Length
953 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TGGGTGTGGGCTTTCCCCAGGTG
3' ss Score
8.35
Exon sequences
Seq C1 exon
ACTCGGACAACAGCTACAGCCTGAGCTGCGGTGTCCCCAGCCTGCAGGGCAAGGCGCTCCAGAAACGCAACGGCACAAGCTCCAGCACGGGGCCCAGCTGCTCAG
Seq A exon
GTAGAGCCCCCGGCCTGTCCAGCCCGCAGCTCACCCGCGTGACCCGGCACCAGCAGGGGGAGCGGAGGGGCATGGTCCGTGAAGGTCTCCCGACCTGGCCCCTGCCCCGTATGGCTCAGGGTGCTGGGGAGCTCAGAGCGGGCCAGGACCCAGAAGCAGCCAGGCTGCAGGCTGAGGCCCAGCCCAGGGCCCGTGCACCACTGAAGGGCCTGTCCGCCTCTGAGGCTCTGGGCCACGCATCCGGAGTCGTTCTGCGACCCTAAAGTGAGTGCTGTGAGTCTGTGGATCTCAGATTCCGTTTCAGGGAAATGAGTCACGTGCTGTGACCATGAGATTGTAAAAGCTCCCGGAGTCGGGGCTGCACTGGGAGACCCCACCCCAGGAGTACCAGAAACACGCACGCTCTTGGCCTCCGGGGCGCAGCCAGCTCCCTGCAGCCGGAGGCGATGCTTCGGCAGCTCTCCCCATTTGGGATGCTGGACTTAATGACATGTCTGATGCACACGCCGTGTAACGCTAAGCTGCCGTGACTCCAGAAGTCTTTACTGTGGGCTCTGTGAGTTGCTCTCGGAAGAAGGAGGTGGCTCTGAGCATCTGCGTCCTTCCCAGTCCCCTCTCTCACATGCTCCCCTCTCCCGCGTGTGCTGCCCCTTTTCCCAAAAGCACGAGCCACGTAAACTCGCTCTGGTGATGAGAGAGAAGGCGGGAAGCTTGCCTTTCTTCCTCCTCAGACCTCTGGCTGGCTGACCCTGGCTGGAGCTCGGCCCCGCCATCCACACTCGCACTTTCTCAGAGAGAGATGTCAGGCCACAGAGGTCCCACCCCCAGCTCCCAGGGGATGTGGCCCCCCCGGCGGGTCCCCTCACCCTCAGGCCCTCCCCCTCTGCCACGCCTGGCCCCCACCACCCCCCTTCCCATGGGAGAGGCCGCCACTGGGTGTGGGCTTTCCCCAG
Seq C2 exon
GTGCCCCTGCCACCCTCATCAGGCAGAAGGCGCGCTTCAAGATCCGAGATGCCAAGTGCCACCTCCGGCCCCGAAGCCAGGAGCCAGCCAAGGAGGCCCCGAGGCAGCTGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275:ENSBTAT00000037639:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAACAGCTACAGCCTG
R:
CCTCCTTGGCTGGCTCCT
Band lengths:
198-1151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]