BtaINT0129730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114655013-114657390:-
Coord C1 exon
chr5:114657187-114657390
Coord A exon
chr5:114655175-114657186
Coord C2 exon
chr5:114655013-114655174
Length
2012 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TCTCCACTTTGCCCCCGCAGTGG
3' ss Score
9.92
Exon sequences
Seq C1 exon
ACACCTGCGAGGCCGACTGCGTGCGGAGGCGAGCAGAGCAGAGCCTGCAGGCTGCCATCAAGACCCTGCGGAAGTCCCTGAGCCGGCAGCACTTCTCCGTGCAGGTCGCGGGCACCGAGTACGAGCTGGCCCAGCGGCCGGCCAAGGCGCCAGAGGGCCCGGGGACGTGCGGCCCCGGCCACACACCGCAGGACGGCAAATGCG
Seq A exon
GTGAGTCCCTGCCCACAGCACCACCTGCGGTCTGCCTCTGTCCATCCAGCCCAGGTCACAGCCCACGGGGGAGACAGACACGTCGGGAGGGGACGGGGGACAAGGAGGCCCCCCCGAGGAGAAGCACTTAGACACGATGGCTGGTATTAGATAGCACCCCGCACCCCCGGTGCTAGGAGGGCAGGTAGGAAGAGCAAGGTTAGCAAGGCCCCCGGCGAGGGGCATGGAGGATGTGGGACCGGTGTGAGTGGCTAGAGGAGGCTTCCTGGAGGAGGCGCGTGGGAGCCAAGGGCAGAGGAGCCGGGCAAAGATGCCCATGAGACTGAGGGTTTCCCAGGGGGGTGGCCGTGCTGCAAGGAGGAGGGGGGCACCTGGCCACAGCAGGGCCTGGGACAGGGTGGCCAGGTCTCGTGAAAGAGGCTGGTGACCAGTGCCTCTAGTGACAGGTGCCCCAGAACTGGCGCATCAAGTTGGGGACGGTTTTAGAGCCAGCCGCAGGGGGCTAGGAGGTGAACCCAGCAAGAGTCCTTGTTCTAGCGGGGTCCACGGTTACGTGGGAAAGAAGGCAGGCAGCTAGCAGGCAAACACACCCTCAGGACAGAAGAGGGCCTGGCCGGCCTGGGGCGGCCCTGGGCGCTGTGGGATGATGCCCTGGACCACACCGAGTGGGCGCAGCCTCACCTGCCTTCAGCTGCAGGAAGGCTGAGATGGGGGGCGGTTGGAGGAGGAGGGGAGACCTGGAGAAAGATGATGGGGCCTGGAAGCAGGGGCAGCAGGAGAGGCAGACGCGGGAGAGAGAACCAGAGAGCACGCTTTGGAGGGGGAGGCGGGGGAGAAGAAGGCTTCCAGGACGGCTCCAGGGATGTGGGCCACCTGGGCACAGGGGCCGTGGTTTTCTGATCTGGGGGACCTTGGGGGAGAGGGGTCGGAGGAGGTGGGGTTCCAGGTGTCCCGGCTAGCTGGAGAAGCTCGTGAGTCACCCTCATGGAGGTGCTGATTAGCGTGGAGCCACATTCCCAGAGCAGACGGCGTAGACTAGGCCAGAGATGCAGGAGCGGGGGAGAAGGCAGAATCCCGGCGGTGGGGGGCGGACAGGGCAGGAGGCAGAGTGCCGCCCCGCGACCCAGCGGGAGGGCGGGGGACTGGCGGTGCTATCCTTCATGCGTTTTTAATAAGTTACTCTGAAACCATTTCAAACTTGCAGAGACGTTGCCAGACAGAACAAAGAACGTCCACGTTTGCTTCGTCCAGAGGCCCCCGTTGTGGACGGCTAACAGCACTTGCTCCATAATGCTTTCGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGGTGCGTGTGTGTTTTATAAAACCATGAGTTCATACTAGCACCTCTGATTCAATACCTTGGGTTTCTTTCTAACCTTGTTTTTTTATGTCCATGTTTCTGAACATCTTGTTCAAGGAGACGTCCACCTCCCTTCCTCCTTATCTTCCCGACCTGTTTCCTTGTCTCCTCGTCAGTGTGCTTACGTGATCAGCGCCGCCAGCTTCCCCGGGCTCTCCTCAGTCCAGCATCTCTGGACCCTCAGCCCCCCGGCGCCCCGTCACTCCCCCAGCCCCTCTGCTCTGCCCCCCATGGCCTCGGGTAGCAGCTCCCACACAGGGATGGAGAGGGGCGGGCAGGGGGGCTTCGTCTGGATGAAGTGACTGCGGCGCATCCCGGAGGCAGGTGGTCCACGGGCAAGGAGTCGGGGCTGGAGGGCAACGTGCGGAGGCCCCTTACCAGAGGGCTGAGCGGAGGGGTCTGGGAGGGCCCTAAGCAGCAGCAGCCAGGAGAAGGCATGAGACCAGAGTCCTCCCTGAAGACCACCGCCTGACTCCTACCCCCAAACCACCGCTTCTGGGAAGGGTCTGGGCCCCCTCTGTGGAAGGACAGAGCCTGAGCTCAGGGTGCCAGGAGATGGACAGCCGGACCGGCTGGCCCCCACTCCGCACCTCGGCCCCCAGCAGTCTCTCCACTTTGCCCCCGCAG
Seq C2 exon
TGGCCTGTGGGCCTGGCACCTACTTCAGCGGGGAGCCCGGCCAGTGTGTGCCGTGCCCGCCGGGGACCTACCAGGACCGGGTTGGCCAGCTCAGCTGCACACCATGCCCCAGCAGCGACGGGCTCGGCCTGGCTGGTGCCCGCAACGTATCCGAGTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275:ENSBTAT00000037639:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]