BtaINT0129757 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44153577-44157647:+
Coord C1 exon
chr15:44153577-44153729
Coord A exon
chr15:44153730-44157567
Coord C2 exon
chr15:44157568-44157647
Length
3838 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GTGTCCTTTTTTCCAAACAGAGG
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTTCATCCAATTCTGTGACAACATATGAAACCTGCCAGACCTACGAACGCCCCATCGCCTTCACCTCCAGATCCAAGAGGCTGTGGATTCAGTTTAAGTCCAATGAGGGGAACAGCGCCAGAGGGTTCCAGGTCCCATACGTGACATACGATG
Seq A exon
GTGAGCACTGTGAAGCTCAGGCTGCAACATATGTCAGGAGCAGCTCTGGTTTGAACAGAACCCACTCTGGGCCAGCTGGCGGAGTGCTGACAAGCACACATGCTCAGCAATGCAGGCAGGTTATGGAGAAAGGACACTGCTGACTCACAAGTGCCAGTTTCTAAGCAGGTATTTGGAGACACTAACTACAGGCATGAAAGGATGTTTGTGAAAGTAAATAAAAGTGAACATAGCTTGGTGGGGTGGAGTGTGGGCATTGGAGTTAGGCAGGTTGGGTATCATCTCTTTTGTGACTTTGTGATGTTACCAACTCTAGGCTTCCTTTTCTTAATATGTAAATGAAGATAGATAATCATTAGACTTAATGTGAGAGTTCAGTGGGATAATCCATAAAGAACTTGGTTTGGTGCCTGGCACATAGTAAATGCTCAGCAAATATTAACTTATTATGATTGTGGCTTTTCTTATATGGAATCCTAAGGATGGGGAAAAAGACCTGAGTTCTGGTCTTGTCTCTGCCACTAACTTGCTGTTTAACTTTGGGCAAGTTAGATGACCTCTGGTTTTACTTTCTTCTTGTTAAATGAAGGGGTGGCCGATGTGAGACCTGGGGCCCTATCTAATTCTGAGACTTGTGGGACAAACATTTACTAGGAACACAAAATGAACTAGATCCTGTCCTGGAGGGACTCATAACCTAGTAGGGGAAGAGTCATCTATTCATCATGAACTTATTCATTCATCCATGAAGCAAATATTTAATAGCATCTCCTATGCCAGGTATTGAGTGAAGAGCTGGAGTCATAAAATGCAAATGGTATCATAGATGCTACAACAGGGCATGTACAAGATTCTGTATGAGGACAGAGAAGGGGCTGCAGTTCACTTTACATGGGTTTTTGGAGAGAATAAAGCAAAGTCTCAGGAGGTTTGAGTCAAAAGAATTTATAAGTTTTCTTAAAAGCAGCAGGAAGAACATTCAGGAAAAGGAAATGACATGGGTGAAATGATGGAGCACTTGGCATGTTGGGGCCTGATGATTTGGCCCATTGGCAGGGTGCGCGGGACTCAGCAGTGAGAGATGAGAGTGGTAGGAGGCAGGCTTAGGCTATGACGAGACTCAAGTGCCAAGCTCGGAAGGGTAGACCTAATTGTATAGGGAGCCATTGAAGGTTTTCAGGCAGACAAGTATGAAAAGTTGCTGTTTTGGAAAGACAGTATTCTACGGAGTTCCTAAGAACACCTCACATAGTTTATTTCTAACATGTGATAAGATCTAGAATCATCATCTTGGTGCCTAAAACACATCAGACACCAAGACAAGGGATCTCAGCATCAGATTCCTAGATGGACACACATGGCTCCCATGTGGCTCTGCCGGGAGACAGATCCTCCTCTCCCCGCAGGCAGCCAGCTGGGATGAGGAAGGCACCCAAAAGCCACGGAGAAGCCAAAACAAATGTCACCAGAGCTCACACACTTTAGTTCAGGCTGTTCTCAACTCTGTGACACATGAAAACATCTTGCTTTTTTAATTAAAAAAAATTCAAATAAAGAGTTGTTGCTTGAACCAGAGAAAATTACATATAACTCTGGTTAGGCTCATGAGAATGGATCTGGCACGTCACAGCAGAAAATAGTTGAAAAATGCTGCTTTGGCCATGCAGAACCTCTTAGGTCCTCACCAGAGCCTATTTAATATTTTTTCTCAACATATATTTCAGACAAATCTGATATGTGGTTCTAAACCCAGAAGAACAGCAATTGCATTGAGAAGGGGCAGCCGAGGCTGCTACAGACTCGCCCACTGGCTGGGAGAAGCAGGAGGGCCACAGCTGTGCTATCGTGTGCCAAACTCAGAACCAGTGCCAAGTGCGCTTGACCTGGCGCATTCCTCCCAGCCGCCCAGGCAGGAGATGCGACTGCACCTCTTTTCCTGATTTATAGATGAGGCCACTCTGGCTTAGAGATTTTAGTAAGCGCCTGAGGACACAGGAGGACAAAGTTGCAGGGCCTTTGCAGCTCCTGAGTTCTTACCTACGACACTGGAGTGCTTTTCCCATGACAACTGGAACAAGTGAAAAGACAGTCATTCTTAAAAGCAGAGGAAAGATTGAAAAAAAAAAAAAAAACGGTTCTTTTGAGGACTTCCCTAATGGTCCAGTGGTTAAGGCTCCACATGCCCAATCCAGAGCTCCCAGGTTCAATCCCTGATCAGAGAACTAGATCCCACATGCTGCAACTCAGACCCAGTGGAGCCAAATAAATAAATAAGAATTCAAAAAAAGATGGTGATCTGGAAGGATTTGTGGTGCCAGACAGCTCTCCAGCATAGTGACAGGCATTCCTAATGGTAAACTCCTCATCAGAAGGGGCAGATTCTCTGAGGGGCTAATTCTCTGAGGGGCTAATTCTCTAACTCCGCAGCAGAGGAATTCAAGATTTTAAAAAATGTACCCTTATTCATATTGTATAGTTTTTGTATTCACTAAAATTAAAGGATAAGAAGAAAGAGACCAAATGAACAGAGGACCAGAGACATTGTACAAACATGTATTCAGTTAGTAATTATGAGTCTTATCCTATGAATTTCCATTTCCCATCACTTGAGGAGGGGAAACTTTTTGAGAACTCCTCCCACACAGTTCCAGTGATGCTCTTATGATTTGTTTGGTTTCGTTGCACACGATATGCATACAAAGAGGCACTTCTTTTCTGCCTGGAATTTTAAAGAGATTGTGTCTTGCATATGCTTGATTTGAATTATGACTGCAGGAAATAGGCTAGACTTCGAAACGCTACTGCATCAAGGAGGATGATGGCTGAGAATTGAGCTTTGGGATTTAGCGACGTGAAGGTCACTGGGGACCCCGACAAGCAGTTCTGGGGGAGTCGTGGGGGCCACTGTTGACTGGAATGGGTTTGAGATAGAAAATAGAATTGGAGACAGTGAGTGCTGACAATTCTTTCAAGGAGTTTTGCTACAAGGGGGAGCAAAGACATGGGATGCAAGCTGGAGGGAGAAATAAGGTCAAGAGAAGGTTTTTAAAAAAACAAAAAACTAGAGACACAACAGCATGTCTGTTGTGCTGATGTGAAAGACTAGCAGAGAGAGAAAAATCGTAATGTAGGAAAGGAAGGGCAGAATGACGGGAATAACGCCCTTGATTTGCTGAGAGAAGAGGGAGCTGGTGAGCAAAGTGGAGGGAGGAGCCTTGGCTGGATGCTCTGAGGGTTCATCTGAGGGAAAAGGATCAGGAGAGGGTGTACAGGTGCCGGTGGGCCAGACAAGAAATTCAGGCAAGGCTTTACTGGGGCCCTGCTGCAGTGGCCAGGGGAGGGAGAACAAACAGGTTCCCTCGATTGCTTGCTCGTTGCTCCCTGCTCCCCAAGAAGGTGCAAGCTTGTTCCTTATGTGGGGTGAGAGTAGGGGTGTGTCCAGGGGTTGGGCTGGAGGGGTGGCTTAGGTGTTTTGCCCACCCCTTTAGTGGTGTTGTATGCAGGGGGCATGGGCAGTACCCTGCTTTTGCTCCAGGTTCTTCAAAAGTGGCAGTTGGGTTTTTTGGTCTCCTTGTATCTTTGGGGTCAAGAGTTTGCCCCAACTGAATATGCATGCCATTATTTTTAGTCCCATACAGTTTCTTTATATTTTGTTCCAGGAGTGGTGTGTCTAGATACAAGCATTGCAGCCTGGCTGCACAGGGTCCCAGGTCCCAACCGGTCTCAGCTGCAGAAGGGGCATTTCTCAGAACATTATTTGAACAATTAAAGAAAAGAGTGAGCTTGGAAATAACTAAACCATAGCAAAAAAAAAAAAAGTGTCCTTTTTTCCAAACAG
Seq C2 exon
AGGACTACCAGGAGCTCATTGAAGACATAGTTCGAGACGGCAGGCTCTATGCATCTGAGAACCATCAGGAAATACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development