BtaINT0130604 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002299 | SEL1L3
Description
Bos taurus sel-1 suppressor of lin-12-like 3 (C. elegans) (SEL1L3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206556]
Coordinates
chr6:46863467-46865934:-
Coord C1 exon
chr6:46865819-46865934
Coord A exon
chr6:46863526-46865818
Coord C2 exon
chr6:46863467-46863525
Length
2293 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GTGTATCTCTCCCAACATAGATA
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCTACTTGCATATTCAAATGCATCTTGTCAAAGGAGAAGACCTTGCTGTAAAAACGAAATTCACCATACCTTTGAAGGAGTGGTTTCGCCTGGATATCTCTTTTAATGGCGGCCAG
Seq A exon
GTACCAAGAGCATGTTCCATCATGAATCATATCAGCACCATCACTTAACTTTAAGCATTGCTGTAAAGTCAGGGAGCTAAGAAATCTGCAAAAACAAATTTGTGGTAACTGATAAACTTTTACAACCATAACACTTTTTTTAAATAAAAATTTTATAGTTGGAATCTTAAATCATAAGCATTCTATCCCATTTAATTAACTTTTAAAGTGCTTTTTTTGACTATATTGTGAATGAATAATACATCTAGCTATATAACCACAATTATCTGAGCAATTCAAGCCTTTTTTCCTAGCAAAATAGGCTTTGAGGAGATAAATGGTAAAACAGCCTTGGCCATATTTATATAGTGTTATCAAATCTACAACTTTTTTATAGGAAATTTATTGGTTCGCTCAGCCAAGAAGTGGCTTGACTGTTTTTGGCAGTGAAAACAATTGCTTGTGCTTGACATTAAACAAATAATAACCAACAAACCTGAGTGATAATTCTGGTGAGGCAGACGTTCTTTATCTACTTTGGACTACGAAACACTGCACATAACAGTTTCAAGCACTTATAACACAGATTTTATGGATTATGGCAAATCTCTTGTTATTATTGAAGATAATGCCATTCCTTTATATTGTTATATATGATACTGGTATACTACCTTTTTTCTGGTTACTTTCTTATCAGCTTTTCTTACTGATTTGTGATTTTCTGAAAACGAAACTGGAAAAGACGTTTTGTTTGTCTTCTGTGTTAGAGAATACACAGACTTCCCTTGGTGGTTAGGTTTATCACATGTCCTTTTTCTGAAGAGAAGAGAAATTGGGTCAGTCCTTGTAGCTTAACTGAGGAGCGTTTGTAAGACATTAGCTGGTGTTTTTGTATGTTTGTTTCCTTAATGTTGTTAGGTGACATTGCTGCGGTCCGAGTTTTAGCTTCTCATTTGCATGAAGATTATGATGACATTATAGCTTGGTTGCTGCTTTCTCTTAAGGTCAGGTCAGTGCCTCATATCACTTAGGTATCAAATCATCAGAGCAAATCACAGATCTTGTTTTATACCTGCTGTATGCCAGGCACTATGATCAAGGAGCTTAGAGACTATTTACGGAAGTCACATAGAGCAGGTAAAGGGGTGTCATAAGGTGAGCCTAATTGCCAGATGATTCATATTCATTCGCAGAAGAGAGACATCCAACTTCATGCTGGGATGCTCAGGGAAGGTTTCCTAAAGAAGGTTCCTACAGATGGGGCACAGAGTTTAAATGGAGAAACAGAGGAGATATTTTAGCCCATCATTGGATGCTCACTTCCAATTTCTTCTGGCCATGCAGCATGGTGTCATTGAAGTTTTTTAAACAGAGGAATAAATCAAAGTAATCCTTTAACTAATGGCAGAGTACATGATTGGGTAAAGCAGAAGAGAAGAGTTAGGAAGACCAGATGGAGTAGAAAGAAAAAAAAAGCTAGATTTTTTTTTTTAGTAGACATTCACCAATTGCCCTTTTATCTTTGCATCCCATCTGCTCTCCCTGATACCCATAGGTTCCAAAATAATACTTATTGTTTTTCTACACAAAATCCAGCTCAGTGGTAAGACCACTATATTCATTACTTTGACTAAATGGACACATTGGCCTAAAGTAAATGGTTGGTTCAGAAAGACAATTGGTCTGAGTCATTTTTTTCTCTGAAACAACATGGTGTCTGTGGCTGAATTGGACTGCTTTTTCTGAGTTAGCTTTTCTTTCAGAGACATGGTGTTGGAGCTACATCTTTGAGAATCTAGTTAAGCCAGAATGTGTTTTCTGAACACTTGCTCTGTGGTAGCACTGGGGAGTCAAAGAGCCCCCTAACCTTACGGGCTTATGTTGTAGTCCAGACACGAGAAGAATGCAAGACAGCTAACAACACTCACGATGAAAACATTGTCACCATTGAAGTGATGGTGACGATTCTTAGTGCTGAGGAAGTAGCTTACACCTTTCTTTGTCTTTCTATGCAACAAGCTTTCAAGCACGAATTCAGCAAAAGAATCTTTTGACTCAAAGTTTGGAAATGTCTACAACCCCCTGGGGGAAACTACATTATAGATATTTTTATCATCTCAAGTCATTTGGAGAAATTAAATTTCTTAAGTCTCAAAATATACACAGGGTTGGTAAACTGCTATTTTGTTTTTTGCAGAAACTGATCAAACAAAAGACTATGAAGCATATTTTATGAGTAACTCATCCCCAGGACTGTATTTATGGTGTGGGGTCTGGAGGCATTACTAATCCTTGTGTATCTCTCCCAACATAG
Seq C2 exon
ATAGTAGTAACCACCAGCACTGGGCAGGATTTGAAAGACTACCATAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002299:ENSBTAT00000002970:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]