MmuINT0140907 @ mm10
Intron Retention
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53181722-53184879:-
Coord C1 exon
chr5:53184764-53184879
Coord A exon
chr5:53181781-53184763
Coord C2 exon
chr5:53181722-53181780
Length
2983 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TATATTTCTCTCCGATGTAGATA
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCAGTTTGCACATTCAAATGCATCTCGTCAAAGGAGAAGACCTGGCTGTAAAAACCAAGTTCACCATCCCATTGAAGGAGTGGTGCCGACTGGATATCTCGTTCAATGGAGGCCAG
Seq A exon
GTATCTGCTTCTACTCTGCCTGGAGTCCTGGGGACATCTCTTTTGAGCTACAAAAAAACATTGTTGCAAAGGCAAAGAGCCACAAAACCTGGGAGGGGATTTGGCGAAGGATGCACCCTTTACAATTACACACTTGCTAAATCGAACTTTATAGATGGAAGTTTAAATCATAAGACTCTCATCCCATTTAATTAACTTTTAAAGTGCTTCTTTCCGCTCTGCGGTGAATGAGTAAATAATATAGCCAGCTCTGTAGCCACAATTATCTGAGTTATTCAGTCCTTCTCCCCTAAGGACATAGGCTTCTTACACTTAAGTGTCAAAATCACATCGGCCATGTTTACATGGCCTTATTAGATCTACAACTTTTTTTTTAAGGGAATTTATTGGCTAGTTCCGCTTAGAAATGATTTGACTGCTTTTGGCAGTTGAAACAATTGCTTACGCTTGGCACTAAACACACTCGTAATAACCAACGCGTATAAGTGATGATTGTGTGGGGAGGGAGGGTCTTTATCTATTCTGTACATAAAACATTGCTCATAACTCTCTCAAACCCCACTAACAGAGGTTTTTATGGATTGTGGGAAATCTGTTGTTGTAACTGAAGACGATTCCATTTCTCCATTGATGCGATGCCTGCATGCTAGCTTTTTCTGGTTACTTTATTTTCTCATCAGCTTTTCTTATTGATTTGTGATTTTCCTGGAACAAAACTGGAGGCGGCGTTTTGTTTGTCTCGTGCATTAGATAACGCGTGGTCCTCCCTTGTGCTTGATGTCCCCATGTTCTGAAGCAAGGGAAAAAAAAATTAATCAGGTCAGCTCTTGCCACCTCCCTGAGAGGACTGTGTGAGATGCTAGCTGGGGATTTTTGTATGTTACTTTTTCCTTAGAAAATCTTCAGTAACATAGCTGAGGTCCATGTTACCCATGCCCGTGGTATGTGAGGCACATGCTGCGCCACCAAGACAGGCATCAAATCATCAGAGCAGCTACACAGATCTGACGCTGCACCTGCTGTATGGAAGGCACAGGCTCCAGTTACTTATAGACTATTTATGGAAGTCACATTAAGCACGTGAAGAGAAGTCATAAGGCAAGCTTAATTGCCAAATGATTCATATTGATTTCTAGAAGGAAGACAGCGTTCCATGCTGGGATGCTCAGGGAAGCGGTGTTGTACAAGGCTTTTATGTTTGGGCAGAATTTAAATGGAGAAGAAAGGAACAGGGATTTCTGCTATGATTGGGAAGTTCACAGATGAGCCAAGTTGACTGGGTCTGTTGCTAGAGACTATCCAGAGACAAAAAGTTAGTTCCTCACAGTTTTGAAAGCTCTTACTGGCATCTTGTGGGAGCCCTCTTGCTGTATTACAGCATATATGGTAGCCGGAGAGAATATTCTGGCTGAGGTCACTCTCTTTCTTTTTTTCTTAATTTTTATTATATCTATACACATATACTTAGTTTAGTGTGTATATGTGATATATATATATATATATATATATATATATATATATATGTAAGTGCAGGAATTTTCATGCCACAGTAATGATATGGAGGTCAGAAGACAACCTATGGGAGTCAAGTCTCTCCTTCCACCGTGTGGAATGCAACTCAGGTCTTCAGTCTTGGTCCATCTCCCTTTACCCATTAGGCCATCTTTTGGGTCTTTTCTTCTTAGGTAGCTGTTAACCCCATCAAAGAGACTCATCCTCATGGCTTCATATAATATGAATCCTAGAGTTTTCACCTCCACATACCATAAGCATACATGTTTAGGAATTAAATTTCCAATGTATGAACTTGAGGAGCATAGAAAACTAAAAGAAAAAAAAGTTATGACTTTGGAGCTAGAATGTGCAGAAACGTCAATTTGGATTTTAGCTTGCAAGGCAGTAGAGAATCATAGTGTTGAACAACCAAAGGATACAGTTCCTTAGGTAGAGAGAAGAGCTGCATGGTGCAATGTGTGATGTGATGAAGCCACAGAAAGGCAACACAGAAGGGCAACAAGGTGGGGAAAAGCAGGGTTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTTTTGCCAGTGGGTTTCAGATACTTCTAGACTCGTCTTTCTCGCTGCCTCCTCTGGTCTCCTTTGTAGATTTAAACCTCTGGTGGGATTGCCACACTCCCTGATCTGATCAAGCAGTCACTTAGAGTGATTGCCAAGAGAGACAACTGGTTGGGTTCTTTTCTTTCCTCACATGCCCTGTGACTGGTTGGGTTGGTTTCTAGTGGTTTTGTTTGTCTTCCTTAAGCATAGGGTGATCTCTAAGTCTTTGAGACTCTAGAAAGGTCAGGACACCTTTGCTAAACACTTCCCATGGAAGTGTCTGAAAAAAGTGTCTCCATTAGTCCCAAGGACTCACACAGTAGTCTTAGCTCTAAGAGGAACCTACTTGAGACAACACAGAACATCATGAGCAAGACATTGTCCTCACAGAAATGAGGGGGAGGACTCTTGCTGCTTATGGGAAGGGCGGCGGCAGGATCAACGGGCAGTGAAGACCATAGAGCATCAGGCTTCTCTCCCCTACCATGGCTCTGGTAAAATCAATAAAACTTCTAAGCCTGCTTGTCCTGTCAGGTGTACTTCCTTGTCTTCTTCACAAGAAGTTTGGAAGCACAGACAGACCCATCCAGTCAACCTCTGGCTTAAAGTCTGGAAGCATAAAAAACCCACTGGCAGAAATTGCATTGTAGATATTTTTAGACACAGCATCCAGTCATTTGGGGAGAGCTAAATTTATTAAGTCTTAAAATATACACAGGGCTAGTAAACTGTTAATTTTATTTTTGTAGAAATTAATCAGGAGAAGGACAAGCACATTTCACGAGTAATTTATACCAAGGATCATATATATTTATAGCGTGGGGTGTGCGGCCTTATCTGACCTGTATATTTCTCTCCGATGTAG
Seq C2 exon
ATAGTGGTCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189:ENSMUST00000031090:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types