GgaINT0072900 @ galGal4
Intron Retention
Gene
ENSGALG00000014370 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:73002988-73004089:+
Coord C1 exon
chr4:73002988-73003103
Coord A exon
chr4:73003104-73004033
Coord C2 exon
chr4:73004034-73004089
Length
930 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
AATATTGTGTGTTCTTTTAGGTA
3' ss Score
10.7
Exon sequences
Seq C1 exon
GTTATGTGCATATTCAGATGCACCTCATTAGGGGAGATGACCTTGCAGTGAAAACAAGCTTCAGCCTTCCTCTGAAGCAGTGGTTTCGACTGGATCTCTCTTTTAAGGGTGGACAG
Seq A exon
GTACATGTCTGACTAAATTACAGGATCAAGACCGAGAGTCTTCTGATTTGATTATGCCTCTGACAAATTCCTTAACATATCCCTCAGCTGAGCACTCTTATGGCAGGAAGAGAAAGTAGAACCAAACTTAAGAACATTTCAGTACTTAGAGTCATTCTTGGGACAGATTAAACTGCGCTTCAGTTCAATTTCATTTACACATCTTCCTTTAGTAAGTTTTTTAATGCTTTGATACTCCAGAGGTGCACAGAAGTCTCCTTATTACTTAGTTACTTCACTTTCATTGATGCAATATGCTTAATACAACAGGATCTTAGACAAAATGTTTAAGTTACGGAAGAATGGGAGATTGAGGCATCAAGAAATGGAGAGTCTGATTTTATGAGCACTGAAAGATGAAGATGAATCTATAAAGGTGCTTCAGCTCTTGATGTCATTTCACAAGGTTGTTCTGTGTGACCTTAGACAACTTTTTAAAACAGCAACGTGTATAAAAACTGTATCTTGTCTTCCTTTTCAGACATCTAATTCCTAGATTCGTTAACTTTTTGGCCATTCTTTACCTGTAAGCTACAGCTTCTTGAGGAGATCAATATTCTCTTCATTTCTCTACTATATAAAAGCAAAACATGTTTTCACACTTTGGAAGAGTAAAAGCTTCAGCAAAGTATAAGTGCCTCATAGTTGAGCACAGAAATTAAATAGTTGAAGTAGGTAATATCTGTGCTATTTTTTTCCTCTTGTGATTGGCCACCATAGGCCACCATCAGTGCTTTCCACTAAAATTTCCTGACAAGTCATGAACATGATGCTGATGTAGAGGACATGCAAGACACCCGCAGTTGTAATCTTGTGAACTATGTGTTGAACTGTCTTAAATATTCCTTGTAATATTTAGTCTATTGCAGTTAATATTGTGTGTTCTTTTAG
Seq C2 exon
GTAGAAGTGAGCAGCGTTGGGAAGAATTTGAAAAGATATCACCACCAGTCATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370:ENSGALT00000023214:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]