RnoINT0132693 @ rn6
Intron Retention
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60151136-60154367:+
Coord C1 exon
chr14:60151136-60151251
Coord A exon
chr14:60151252-60154308
Coord C2 exon
chr14:60154309-60154367
Length
3057 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
ATATTTCTCTCCCGATGTAGATA
3' ss Score
8.43
Exon sequences
Seq C1 exon
GCAGTTTGCATATTCAAATGCATCTCATCAAAGGAGAAGACCTGGCTGTAAAAACAAAATTCACCCTCCCTTTGAAGGAGTGGTGCCGACTGGACATCTCTTTCAATGGAGGCCAG
Seq A exon
GTATCTGCGTTTTCTCTGCCTGGAGTCCTGGGGGCATCTCTTTGGAGCTAAACATTGTTTCAAAGGCAAAGGAGCCACAAAACCTGGGAGGGAATTTGGCAAACGATGAGCCCTTTACAATTACACACTTGCTAAATCGAACTTTATAGAAGGAAGTTTAAATCATAAGACTCTCATCCCATTTAATTAACTTTTAAAGTGCTTCTTTCCCCACTCTGTGGTGAATGAGTAAATAATATAGCCAGCTCTGTAGCCACAATTATCTGAGTTATTCAGTCCTTCTCCCCGAGGGAGATAGGTTTTGTGCACCTAAGTATCAAAATCACATCGGCCACAATTTACATGGCCTTATGAGATCTAAAACTTTTTTTTAAGGGAATTTATTGGTTAGTTCAGCCTGGAAATGATTTGACTGCTTTTGGCAGTTGAAACAATTGCTTATGCTTGGCACTAAATACACTCGTAATAACCAACACATATAAGTGATGATTGTGGCGGGAGGGAGGGTCTTTATCTATTCTGTACATAAAACATCGCTCATAGCTCTTTCAAACCCTCCATAACAGAGGTTTTTATAGACTGTGGGAAATCTGTTGTTGTAATTGAAGACGATTCCATTTCTCCATCGATGCGATGCCAGCATGCAAGCTTTTTCTGGTTACTTTATTTTCTCATCAGCTTTTCTTATTGATTTGTGATTTCCCCGGAACAAAACTGGAGGAGGCGTTTTGTTTGTCTCGTGCATCACATAACGTATGGCCCTCCCTCGTGCTTAAGGTTCCCACCATTCTGAGTACTGAAGAGAATAAAAAAATTAATCAGGTCAGCTCTTGCCACCTTCCCGAGAGGACCGCGTAAGATGCTAGCTGGGAATTTTTGTATGTTACTTCTTTCTCCTTAGAACATCTTCAGTAACATAGCTGAGGTCCACGTCCCCCATGCCCATGTGTGTGAGGCACACGCTGTGTCACCAAGACAGGCATCACATCACCAGAGCAGATTCATAGATCTGATTCTGCACCTGCTGTATATGTATGGCACCAGGCACCAGGCTCCAGTTACTTATAGGCTATTTATGGAAGTAACATTAAGCACGTGAAGAGAAGTCATAAGGCAAGCTTAATTGCCAAATGATTCATATTGATTTCTAGAAGGAAGACAGCGTTCCATGCTGGGATGCTCAGGGAAGCGTTCGTGTACAAGGCTTTTATGTTTGGGCAGAATTTAAATGGAGAGAAAGGAGCAGGGATTTCTGCTATGATTGGGAAGTTCACAGATAAGCCAAGTGGACTGGTGTTACAGACTCTCCGGAGACAAAAAAGTTAGTTCCTCATCGTTTTGAAAGCTCTCGCTGGCATCCAGTGGGAGCCCTCTTGCTGCATTCCACCACAGTACGGGCATCACTAGATGATGGCCAGAGAGAACATTCTGCCTGAGGTCTCTCTCTCTCTTCTTCTTAATTTTTTATTACATCGATAGACATATACTTGGTTTAGTATGTACATATGATATGTACATGTGAGTGCAGGAATTCTCATGCCACAATTATTACATGGAGGTCAGAAGACAACCTTTGGGAGTCAAGTCTTTCCTTCTACCTCGTAGAATGAAACTCAAGTCTTGAGCCTTGGTAGATCTACCTTCACCCATTCGGCCATCTTTTAGGTCTTCTCAGGTAGCTGCTAATCCCATCAAAGGGACCCATCCTCATGGCTTCATATAATATGAACCCAGAGTTTTCACCTCCAAATTCCATAAACATATACATTTAGGAATTAACTTTCCGGTATATAAATTTGAGAAGCATAGAAAACTAATAAAGTTATGTCTTTGGAGCTAAATGTGAACTTCAATTTGGACTTTAGCTTGCAAGGCCGTAGAGAATCATAGTGTGAACAACTGAAGAATACAGGCCCTTAGGTAGAGAGAAGAGCTGCATAGTGTTGTGGTGCAATGAAGCCACAGAGAAGTAAAAAGAGCAAAAAGGTGGGAAAAAACCCAGGGCTCCCTGGTATGTGTGTGTGCGTGCGTGCGTCTGTGTGCGTGCGTCTGTGTGCGTGCGTCTGTGTGCGTGCGTCTGTGTGCGTGCGTCTGTGTGCGTGCGTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTATGTATACTCTTTTCCCAGTGGGTTTCAGTTACTTCCTGACTGGCCTTTCTTGCTGCCTCCTCTGGACCCCTTCATGTACATAGGTTTAAACCTCTGGTGGGATTGCCATACTTACTGCTCTGGTCCAGTGGATCAGCCACTTAAAGTGGTTGTTAAGAGAGACAACTAGTTGGGTTCTTTTTGCTTCTCACATGCCCTGTGACTGGTAGGGGTGGTTTCATTTGAAGGTTGATCTCTAAGTCTTTGAGACTCTAAAAAGGTCAGGATACATTTTAAACACTTCCTGTGGAAGTGTCTGAGAAAAAGTGTCCCCGTTAGTCTCAGGGGCCCACACAGTAGTCCTAGATCTAAAAGGAACCTACTTGAGACAACACATAGCGTCACGAGCAGAACATCGTTCTCACACCGAAATGAGGGTGATGACTCTTGTTGCTTACAGGGGAGGTGGGTTCAACAAGCAGCGAAGAACATAGAGCACCAGACTTCTCTCCCCTTCCTCACCCCCGCCATGGCGCTGGTAAAATCAGTAAAACTTCTACGCCTACTGTACTGTCAGATGTACTTGTCCTCTTCACAAGAAGTTCAGAAGCACAGATGGACACATTCAGAGCACAGACAGACAGACACATCCAGTCAACCTCTGGCTTGAAGTCTGGAGCATAAAACCCACTGGCAGAAATTGCATTGTAGATATTTTTAGACACAGCATCCAGTCATTTGGGGAGAGCTAAATTTATTAAGGCTTAAAATATACACAGGGCTAGTAAACTGTTAATTTTATTTTTGTAGAAATTAATCAGGAGAAGGACAAGCACATTTCATGAGTAATTTATACCAAAGATTGTATATATTTGTAGCATGGGGTGTGCTGCCTTACCTGACCTTATATTTCTCTCCCGATGTAG
Seq C2 exon
ATAGTGGTCACTGCCAGCATTGGATGGGACTTGAAAAGCTACCATAATCAGACCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932:ENSRNOT00000006610:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]