BtaINT0130805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:22014670-22030637:+
Coord C1 exon
chr21:22014670-22014833
Coord A exon
chr21:22014834-22030473
Coord C2 exon
chr21:22030474-22030637
Length
15640 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GTCCATCATCCTCTCTCCAGGCT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTCGCTCCCCGCGGTCCGAGTCCGGCTCGCCGCGATGGGCCGGGGGAGCCGAGCGTCCGCCCTGCTGGGCGCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTACCGCCGTCTCCCTCTCGGGCGCTCACCCCTCGGATCAGCCTGCCTCTCG
Seq A exon
GTGAGTGCTGGCCGACCCCGCGGAGGACGCGGGCGGGGGTCTGGAGGAGGGGAGGGGGCCGGAGAGGTGGCTCTGGCGGAGGTGGTGGTGACAAAGGAGAGGGAAGGGGAGGGGGGTCTGTCGGAGGCTTGGGGTCCATGAGGAGCCCTCCTCCTTCCAGCACGCTGCCGGGAGGGAGGGAGGAGAGGGGAGCTGTGGAGCCGCAGGTCTCTTTCTTCCATTCTTTTAATGGGCAGGGAGGGGGTCTTTGGGCCCCTCCTTCGCCCCCTGGTACGGCGCCCTTTCGGCGGTGACGCTGCCCCCATGTCGCCCACCCCCGGTGCTGGCTGCCCGCTGGTCCGCCTGTACATCTGCTTGTCTTTGATGCTGACCAGAGCCAGCCGCGGTGCCGCCCCCGGAGGGCGGCTTGGGGTGGAGGGGCCCTTGATGCCGTCCGGTAAACACTGGGGTTCTGGTGTTACAGCAAGTCAGAGCAGGACTCGGGAACCGCGGCGGGTGCCCCATTCTCCCTCCGCCTGTTCATTCTAGCGGGCTGGCTCAGCTTGCACCCCCTGCCCAGACGTGGTGGGATACCCCCAGGGCCTGGAAGCCACCGTAGGACCCCCTCCCCGGAGTCACCCGGGAGCACCATCCTCCTTGGCCAGGTCCCCTGTCTGGTGCTCACATCTGCTTCTGTGGCGCCCTCCACTCTTCGCGATCCTTACTTCCCCTGATCCTTACTTCCCCTTTCGTCTGGTTGCTGTTCCAACTCTTTGAAGTCAGAGGCACCTGGATTCCAATCCCATTTCTGCTACTGCCACTTCTTCCCATGCCCCTGTTTGCTCATCCATAAAATGGGCACTGTTACTGGATTTTTTGCGTGGCTATCTTGGAGATTTCATGAGACTAGGCAACATATATAGGTGCCCAACAGATGTTGTTTCTCCAAGCTGTTCAACTTGTTGGTTGTCATACTGAGTGAATTCAGATAAAGGATGTATAAAATAGAGTTTACAAATCAAAACTGTACCAGGCTTCCTTGTTTTTACAGCGTCTCCACTTCTAAAAGCATTTCATTTACTGGGACTTCCCTGGTTGTCCAGTGGGTAAGACTCAAGAGTTTCCAATGCGGGTGGGGGCAGGGGCGGGTTCGATCCCTGGTCAGGGAAGTAAGATCCCACATGCCTTTCAGTGTGGCCAAAAAAAAAAAATTTTTTTTTAAAAAGCATTCCATTTACAATAAGAAAGAGGAGCAGAATCGGTCCTTAAAGTAAGTCCGGGCCACTGGGGAAACCCTGTCTGAAACATTGCAGGATAGTACTGAGATGATGCCCTGAGTTCAAATCCTGCCTCTGCCACTAAGTAACCGTGTGACCTTGAGCAAGCTGCTTAACCTCTTTGGGGCTTCATTTCCTCATCTGTAAAACAGGGATAATGATAACACCCACCTCAGAATTGAGATGATTAAATCAGCTTCTGTTTGAAAAGTCCTTAGGACAGGGCTTGGTACATAAAACCTGCTCCATCAGTGTTAGCTATCATATTGATTGCCACGCGTTAGCATGGGCTTTGACACATCCTGCCCAGAGCCCGGGTGATTCTGCCCCTGAGGTGGGGGGTGGCAGTGCTGGGGCGTTAGTTTGACCACAGTCCGTTGAACGCTCCAGCTGGGTGACTGAGGCTCGCAGGTGTATCCGGATCCAGGCCCGCTGCCTCGCTGCTCTCACTCTTGAGGCTACCACTCCCTTTGCCCTCAAACTCTCTCAGCTTTGGGAGATGGTGAGATGAGGAGGGGCGCAAAGGCTCTGATGGGCTACTTCTGGCCCTGGGAAAGCTGGGCTGGCTCAGGGGGTGTGTCAACTGTAGCAGGTATTGTGTCCACCTCTGAAGCTGGCCGGGGACCACTCATAGGATGACAGACAGAGAGGGAAGGCAAGGCAGAGAGGGGAGCTGTGAGGAGGAACTGAGAGGGCCTGCTTCCTGAGAGCGGCTGGAACACTTGGTTGTTAACTACCCACACCGAAGGCCTGGCCCACTTCCGCACGTCCGGCACCGTGGCCAGGCTGTAGTGCAGGCTTGTGTCACATGCCAGCACCCCTTGCACAGGTCAGTTTGGTGCTGTGGTGTGGATGTCTGTGTACTCCCACAAGTCGTGTGGTAAAATCCTAACCCCCCTAAAAGAAGACACTCAGGCTCACCTGTGAGGACTGTGCAGGCACGCGCGTTTGGTGAGGCACAGAGGCGGCCAGCTGAGGGGCCGAGGGCCTGAGATGCCGTTCATAGACTCTGCTTTCCAAGCTGTGGAGCCTCGAGAAAGAGGTTTTCCACTGTGTGCTTGAAGCTGGGTCTATGCACAGGGGTCCTCTTTTTCTCTTTTTCTTTTAATTAGTTTATTTAATAGGCTGCACCAGGTCTCAGCTGCAGCATGCAGGGTCTTCAGTCTTTGTTGTGGCATGCAGGGTCTTTAGTCGCAGCTTGTGGGATCTAGTTCCCTGACCAGGTAGGGAACCCAGATCCCCAGCATTGGGAGCATGCAGTCTTAGCCCCCGGGCCACCAGGGCAGTCCCACCAAAGCCCTGGCATCGTTTGGCAGCACCTGAGCACGTGAGTGTGAGTATCTACACTTTGCTGAGCTGCACTGCACCCAGAGTGTTCATCTCCCTGGCTTCGCTCCAGGTCCTGAATCCCCACTGCCCCGCTGCAGTCTACATGCACGTCTCCCAGCCGCTGGGAGCCCCAGAGGGGAATGCCCTGGGGACCGAGCGGGTGCACCCTCAGAGCGTGGCCTGAAGCGGTTTCCTGTCTCATCCCTGGGGGCTCATTAGATATTCCTGGCAGTGAGCCCATGCTGGGCAGGCCTGGGGTGACCATGGGACTTGGAGCCCCAGGCCCCTCCCTCATGGAGAACACACCCTTCTTCCTGCCACCTGCCCTCCTATTCTGAATTCCTACCGAAACTCCCCAAAGGCCTGGGGTGCCTAGGGCGAATGGCCTGTGTCTGGTTTAAAGCAAAATCCTTACAAGTCTGTGTCTGTGCTCTCTGTATGGAGCCCTCATTGCTGTTGATCAGCAGCAAATGCCTGGGGCCATCAGAAGGGGGTGCCCCACTTGTCTCACCCCGTGAACAGGAGGTGGGGGAGGAGGGCTGGGGGCTCCAGGGTCAGCTCGGGCCGCAGAGGCCTCAAGAGGAAGTCTCTTGTCCGTGTGAAAGGAATGCTTCAAAGAAAAGTGTGGAAACTTGGTTCTATTGCATCAGAGACTGTGTGGTCAGGAGAGAGGCTTTGCAGTGATCAGGAACAGGAGAGATGCAGACTGGAAACAGGGCCCCGGGTGTGCAGTGCCATCCAGCCTGGCCATGTGGGCAGAAACAAAACAACCTGCTCCTCTGCTTGTGAAAGTCACATTGGGTCCCCTTATTTGGGCAATTAAAGGAGCTATGAATCCCCCCCACCGCCCCCTCCCCAGCGGCCTCAGAAGTGCCTGGCTGGAAAACTCTGGACACAGTGTTTCCAATCTAGATTGCACAGAAACCCATAAGTCTGCAAACTTCAGTCAACAAAACCCCATTGAGCAGAGAGGACATGGCAGTGGCCTGAATCAGCTGTTTGTCCTCTGACCTCAAGCGGGCACCCGAGGTCATGGCTGCCCTGAGAAGTCCCATGAAAGCCGCTTGCTTTCTTTCTTTTTGGCCAGGCCACTTGGCTTCGGGGACCCTTAGTTCCCTGACCAGGAATTGAACCCAGGCCCTCAGCAATGAGAGCATAGAGTCCTAACCACTGCACCATCAGGAAATTCCCCAAGCTGCTTTCAAAGTTTTTTTCCTGGCTGGTTCCTGGCCTCCCTCCTTGAGGTGGCCTCAACTTGAAGGTGAACATTTGTCTTCAGCTCTATCTGGTGGGCTGGCGTCTCCGTGGCCCCTCTGCGCCCAGCTGTAACTGTGGGGCTAACAGCCAACTGACAGCACAAGCTGGGGCCAGCGCCTGCCTTCCGCAGGCCTGATTTCACATTGACAAGATGGGAATAATAATAGCAGGACCCACCTCTCTTGGTTCTGAGAGGATTACGTGAAATAATGTATGTAAAGTGTTTGGCCTGGTGCCTGGCACGTGCTCCGTCCTCAGTAAGAGGTAGCGGCTTCTGTTCTCTGTGGTGACAATCTCTGCCCGCCTTGCTGGGTGAGGTTATTTGCATCAGTTTGGTCGATACAGTCTGAGCGCTGGCTGTCTACAGGCCCTCTGCTTGCTGCTAAGATGATCTGGCCTGGGAATGAAATAGTGCAGACCCCCTGCTTTCCCCGGGGGTAGGAGAACAAGCAAGTCCATCCTTTCCACACACCTCCCCCCACCACCACCCTAGGACTGATCGGAGGCCATCCCACGGGGTCCTGCTTAACTCAGTCCACTTTTCAAGTGCTCCTGGTTCAGCTCTTTCAAAGTCCTCCTCTGCCCCAAAACCTGGTCTGCCTGGGGCTGGACCACACCTCTCCCTCCTCCCTGCCCCTCGGTGCTTCCACTCTGCCCTCTGAATAACCCATATTTTTCTGGGTGTTGAAATGCCCGTGTGCCAGCCCAGCAAAAAAAAAACAACTCTGAGGTTGCGTAACTTGGGCCACAGCTGGATACACCTGCATGTTCATCTCCCACATGGAAGGGGGGGATGGCTCGGGGCCTGGAGAGAAAGCTGGACTCAGGGCACGTCTGTCACTCTTTCCTTTGTCCGCTTCTTAGGACTTGTAAGCCCACTCCCCCATCCCTGGGTGCTTAGGATTGGAAGAGCAGCTTCTCATGTGGTCCTTGAATAAGTAATAGGTTGTGTGTTTCCATCGGTGAAAAAACTACTGAGGTCACTGCTTAGATTGGACAAAGGAGCCAACTGATGCCCTGTTGGCCCAGCCATCAGGAAATAGGGTACACTCAGCAGATTCCTAGGGGATTCCCAGGTGGTGCTAGTGGTAAAGAACCTACCTGCCAATGCAGGAGACATGGATTTGATGATGATCAAATCCATGATCAGAAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCTGTGTACAGAGGAGTCTGGCGGGCTACAGTCCACAGGGTTGCAAAGAGTCAGACATGACTGAGGTGACTTAGCAAGCAAGCAAGGAGCAGATTTGGCCAGGAATGTGGTTCCCTGGAGACTGGGGCAAATGTCTCAGCCAGATGTTTGTGCAACAGGTTAGAGCCAGCTTGGAGATAGATCTTTGTCTGGCCTCCAGGTGTTTTAGAAAATTTTTATTTAGTCAGCGGTATTTAAAACTCAGGAAATTTTCTATAAAAGTCCAGATTTCCAGCTCATCTGAAGACCTGTTGAGACTTGGTCCTTGTTCCATTGAGCAGTGAGGGTCTGGGTGAAGCAGCAGCTACCCCTTCAGAGGGGTGCCTGCCTGTAGGAAGCTGCACCCCCATCCGTCCCCCTTGTCCCCTTAGTGGGCTTCAAGGTGGCCAGGGGCAAAGGTGAGGACGTGGGGGAGAGGCATGGGTAAGGCTGATCCTAATTGTTCGTGGCTCCTAATCTGGGAGCTTGTCACTTCCATGGACTATTTTTTTTTTTTTGGTCTTCTCAGCAACCCTGCAAAGGGGCTTCGTCCCAGAAAAGGCAGGTTATCTTGTCTGGCTGGTCAGTGATAAAAGTCAGGACTCACACATGTCTTCGGACTCGTTTCTAGTCCATGGCCTTCCCTGCCTCTCTGCAGTGCTTTCAGCTGTCATGCTTCCCTCTGGACCCTGGGATCCCAGGACTGAGCTTTTGGGGAGGGGACAGGGAGGGGCTGTGCTCCTCAGACATACTCTCGAGAATGTGAGGCTTCAGGACCTCTGGACTGCCCCTTTTGAATCTGATGTCCATCCCTTGCCCAGAGCACCCCAAACTGGGACTTGGGACCCTGTGAATCGTTCATTCAATCAACAAATGTTTATTGAACAACTCCTTGGAACTCACCTGGTGATACAGATACTGGATACAAATAATAAGATAGCCCTTTTTTTTTTTTTTAGGGCCACTTTGGTTTTATTTATTTGTTTATTTTGGTGTGCTAGGTCCTTGTTGTGGCATGAGGGCTGTCTTGTTGTAGCACATGGGCTCGGTTACCCTGCGGCCTGTGGAATCTTCCCGGACCAGGGATCGAACCCAAGTCCCCTGCATCACAAGGCGGATTCTCAGCCACTGGACCACCAGGCAAGTCCCAGTAAGACAGTTTTGATCCTCAAGGATCCAAGCTTGGTGAGGGAGACAGGCATCAGAGGCCCATCGTCGTCAGACAGTGTGGCCAGTGCAGAGCCAGAAGTGTGAACAGGAAGTGATGGGTGCACAGAGAAGGGCCCTTGCCCAGCCGGGGATTCAGGAAGGCCTCCTGGAGGAGGTGAAACCGGGCTGAGTCTCAGAGGATGAGTGGGAGTTAGTCAAAAGGAAGAGCATTCCAGGTAGGGGGACTGCCTGGGTGAAGGCTGGGGAGGAGAAATAGGACCCTGAGTTGCAGTTAGCTCTCCTGAAATGGGAGGGGGACGTGGCATGAACTGGTGAGTTAGGGGCCGAGGCTTTGGGTCACAGGACAGTGACAGTTCCCAGCAGCAGGGCAGGGGGCAGGGGCCAGCTGGCAGCTGCCCCAGTGGCCCAGGTGAGAGAGGGGGGTGGCCGGTGTAGGCCTGAGGTAGTGGGGGTGGTGAGGGGAACAGACCTTGATGGCGTTGAGGAGGGGACTTCTCAGGATGTGACCGTGGTTTTGTCCATGGTGAGAGAAAGGGAGACAGGAAGTGCGCCTCCTGGCTTTTCAGCCTGCTGAGCGATGCCCCACAGACACACAAGATCCCAAGTCGAGGAGTGGTCTGGGAAGGGGTGGAGGTGGGAAGGCGCCCATGGAGGGTCTCCGCATCATGGGGTCTGGCTTGCCCTGGATGAAGAAGCTGGGGAGTCACCAGTGTCCAGGACATTGAAACAGAATGAATGTGTGGCCCAAGGTCCAAAGGCCCAACCCCAGGGAACAAGAAGGTTCAAGAGCAGAAAGGCTGGAGAGGCTGGAGGTGATCTGTAACACTGACTCGAGCCAGTGGCCCAAGTTCGAATCTCAGCTCCACCACTCTTCCTAACTGCATTACTAAGGGCATGTCAGTTCACGTGCGCTTTGGTTCTCTCCCTTGCAAAAAGCAGATGGTAATTCCTACCTCACAGCGACCCGGCCAGGATGCCCGGCAGCAGCCCTTTTATTTAGAGTGCTGAGTCAGCGCTTGAGGGATGAAGCCCAGGAGGAGGATGAGGGAGACATGAGGAGACCACTGCCCCCCGACCCCCGGCCCCCAGCCTCCCCAGCCAAGGCCGGCGTGGCAGACGCTCAGGGACCCCCTCCAGGTCCTGCCCCTTGGCACCGGGGTTTGGCAGGGAGGCAATGCCCAGGCCCGGTGAGTGTGGGGCTGGTTAAGGCCTGACTCCGGTCAGGGAGTAAGTGGGAGGTGAGGAGTGGAGACGGCTCTGGGTGGCTCTTCTCAGGAGTTGGTCTGAGAAGGCGAGGAGGGAAGCACACAGGCTTCTGGGATGAGAGATGGAGGTTGATGACCCAGGACTTGGTTTCTGAGGAGATGAGGGTCACTGGGGTGAACGGTGGGAAGTTGAGGCTGTTTATGCCTGAAAGCCCCAGCTTCCTCAGAAAAGGGGGGGCTCTGAGAGGAGGAGAGTGGGGGTATGGGCCTCAGCAGAGAGGGGACAGCCAGCCCCTTAAGCAGAGGGCTGCAGGAGCTGACCTTGGTCCTGGGTGGGGTAGGTGGGGGTCAGGCTCTCAAGACGATGGCTGCTCATGACAGGTCCTGGGTTAAGACTGTGCTGGCCAGATGAACAGAAGGAGGGGGTGTCTGTAAGGGGCTGGGGGCCGCCTAGGGGTGGCAGGAGCAGTTGGCCGGCTTGGAGCAGCAGCGAGCCAGGAGCCAGGCTTTGCCTGAGTGTGCCTGCCCCTTCCAGGCTGGGTTCCCTCGATTTCTTTCTGTCTTTCTCGGTGACTTCAGTCCGTAGGAAGCACTTCCGGCACGTAGCCCCCTTCCCCCACCACGAGTGACCCTTCCCTGTCTGGTCTGGGGACTCTGCCCTGGCACCGGGGCTGGTGACAGCAGAGTTGGCACGCCGCCCGCAGCCCGTCGGGCCTGCGCGGCGCTGGGCGGTGTGAAAGGAGGACACGACATGCAGGTCGGTGCTGAGTCAGCGCTCCCGGCCAGGAGGGCGGTGCTCCGGCTGGCGCAGGTGGGTCCAAGGGTCCCTCTCGTGTGACTCCCTGCGGAAGAGGTGCTCCAGCAGAGCCTCTCTTAGGGGCTCTCTTGCCTGGGGCCCAGACAGACCCCTCTCTGGGGACCTTGGGATTCAAGCTGACGGGTAGCCAGCCGCCCACCCCCCCCCCCCCACCCTCCCTTGCCCGCTGGGGGCAACTTCCGGGCTCTGACTCCACAGGGAAGCTGATGTCTTCTGGCTCAGTCCTGCTGGGGCCTGTGGAGGGCAGACTGCTGAGGCCAGGTCAGCGTCCGCTGTGGCCCCCCCACCCTGCAGCCACAGTGCAGGGAAAGGTGGGGTGGGGCTCTGAGTCACGGGGGCCTGCCGCAGCGCCTGACTGGCAGGGTGGGGACTGCCCCGGGGTGGGGACGGAGCTGAGCCCTGTTCCCGGCTCACCCCGGACAGCTCCAGGCTTCCGGCTGAGTCACGGCCTAGGGTAGGAACTCCAGTTGAGGCTGGGGGCTGAGCTGTCACCGCATCACTTCCGGCTGAGAGCGCCAGTCCCGAGGGTGTGGAAGTGGGGGCCCTTCAGGTAGCCCTGACAAGCCCAAGCTGCACTCCCCCGCCCAGGCCAGCCCCCATCTCACCATCTTGGAGCCCTGGAGAAGCCACTGGCTCAGGCCGGCCCTAGGCTGGATGGGAAGGTTTCATCCCACCTGGGAGAACCAGCCACATCTTTAGGCAGCCCGACCTTCTCTGCACCGGACTAACCCGCTGGGCAGAGGACGTGGAGGGTGTCTGAGCAGCACAGGACACTCTCTGCCACACACAGGGTAGGGCAGACGCTAAGACTGACCCTGTGCCCCAGCACTCGGGAAGCTGAGTGCATAAACACCCTCCCCCCTTCAGTCACCTCTGCAGATGGCACCCCGGAGCGAACGCTCAAGCACGGACAAGCCCTGCAGTAGGGTGTATACACACACAGACATACGCATACACACACAGAGGCAAGCTCAGGCAGGAACTCCACTCAGAACACCACTGAGTAGGAACCAGAGCGCGCGCACGCACACACGCACACACACCACACGGGCCTGTGACCCCAGGCCCTGTCTGAGCCCACGCCCTCTGCTTGGCTGTGAGACCCTCGCTGGCTCGGCACAGGCCGAGGTTAGAGGCGCCCAGGGTGAGGACCAGGGAAGCCCAGCTCTTCCAAACAGCCCTGCTTCTCTGGCAGCTCTCGCCAGGCTGGATTTTCCTGCAGGGCTTTCTGATTTTGTTTTTGATCTGCTGGAGTGTTGATCATGCGCCAGACACCGTGCCAACACCGTGATAACGTGTGCAAAGTTGTTTTGAGCGAAGCTTTCAGTAAATGTGGGTTATTACATGTATTACTATTTACGTGTCTAATCTCATTTCTTGTAACTACCCTGAGAGGCAAGGTGCTATTATCCTCATTTCACAGATAAAGAAAACAGGGTGCCTAGATTTGAAGTGTGGAGAAGGCAATGGCACCCCACTCCAGTGCTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGGAGTCGGACACGACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCATTGGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCCGGAGAATCCCAGGGGCGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCACACAGAGTCGGACATGACTGAAGCGACTTAGCAAAAGCGGCAGCAGATTTGAAGTGGCTGGTCCTAGTGGCACACAGACAGTAAGTAACAGAGGCAGGAGTTGAGCCCAGGTCTCTGAGTCTGTGCTGTTTATTTATTTGGCAGTGCTGGGTTTCAGTTGCAGCATGTAGGAATCTAGTCCTCTGACCAGGGATCGAACCCAGGCCCCCTGCATTGGAAGCACGGAGTCTTAGCCACGGACCACCTGCGAAGTCCTTCTGAGTCTGTGCTTTTAACTTCTGGCTTGCTGACACTCCCAGCTGGCAAGCGAGCCCCACTGACTGACCCTGGTGAAGGCCACAGGGCAAGAGGGATTGTGGATGGGCAGGCCTTCAGGATACCGTGGTGCTTTGAGTTTGAGAGACGTGGGGCGGAGGGAGCGAGGGACAGGATCCCCAGAATGGGAATGCGTGTGAGAGGACCCCTCGCCTGCTTCTTCAGGGTGTTTTCTGTCCCGTGGCACTTGCATTGACTCCCAGTATGACGAAGGAGGTGTGGGGGCTCCTGGGCAGCTGGTGAGTTTGGAGGGCGGGGCTGGACCAGGGCTGGGCAGCTGGCGCCTCGGCTGCCCCTCCCACCTGGCTGTGACCCTTGGCAAGTCTCCCCGCCCCCCATGCCCCCAGGCCTGAGCAAGGCTGAGCTGCCACCTGGACTAAAGCTTATCTCTGACCTTTGGCATTCCTGTGTGTGGACAGATTGCAAGAGCAGCCTCTGCCCAGGCTTACGGGGACCTGCTGCCTCGGTAGAAATGCGCCTCCTCTGTAGGCAGATAAGCCCTCACTGTCAGGAAACTGGAGCGCTGTGAAAGGATGAGGAGGGGGCTTCCCTGGTGGTCTACTGGTTAAGAATCTGCCTGCCAATGCAGGGGACATGGGTTCGATCCCTGGTCTGTAAAAATTCCACATGGCTCGGGGCAACTGAGCCTGTGCGCAGGACTACTGAAGCCCGTGCGCTCTAAGAGCCTGTGCTCTGCAGCAAGAAATCTTGGTCTGTGAGAAGCCTGTGCATTGCAACTAGAGAATACCCCCACTCACTGCACCTGGAGAAAGCCCACACGGCAGCGAAGACCCAGTGCAGCCGGAAACTAATTAATTAAAAATAAATAAAAAATACTAAAATAAAAGACGAGGGACTGCAGTGGCCATTTGCTCTGGCCTCACTGACTCCTTGTGAGCCCGCTGTGAGTTTTGTTTTCATTATCCCCATTATGAGAAAACTCCAGTTTGGTGAGATGGCATCTACCCTGCCCTACAAACATGGTGCTTCTCAAAGTGTGCTCCATGAGCCTCCTACTTCAGAATCCCCTGGGAGATTCAAAACCTTGCATGTTCTCAGGCCCCATCACGGGCCAGCATCGTCAGAGTCTTCAGGGTCAGCTCGTGGATCTAGAGTGTAGGTCTTCCAGGTAGTTTTGCTGCAGTTTGTAGACGGGAGTCCAGGGAGGAGACCTCCTGAGTTGGCCTTCCATCACACTTCCTTTTTTTTTTTTCTTTTAAATTGGAGTATAGTTGCTTTACAGTGTTGTTAATTTCTGCTGTACAACAAAGTCAATCAGCTATATGTGTACACAGACCCTTCCCTCTTGGACCTCCCACCCACCTCCAGTCCCACCCCTGGAAGTCATCGCTGAGCACTGAGCTGGGCTCCTTGTGCTACACAGCGGCTTCCCATGGCTATCTGTTTTATACACGGTAGTGTATATATGTCAGTCCCAATCTCCCGAGTCATCCCACCACCCTCAGTTTAGTCTTTTCAGCTCAGTCGTGTCTGACTCTTTGCCACCTCATGGACTGCAGCACGCCAGACTTCTCTGTCCATCACCAACTCCCGGAGCTTGCTCAAACTCATGTCCATCGAGTCGGTGATGCCATCCAACCATCTCATCCTCTATCGTCCCCTTCTTGCCTTCAATCTTTCCCAGCATCAGCGTCTTTTCCAATGAGTCAGTCCTTCACATCAGGTGGCCAGAGTATTGGAGCTTCAGCTTCAGCCCTTTCAATGAATATTCAAGACTGATTTCCTTTAGGATTAACTGGTTTGATCTCCTTGCAGTCCGAGGAACTCTCAAGAGTCGTTTGCAACATGACAGTTCAAAAGCATGAATTCTTCAGCGCTCAGCTTTCTTTATAGTCCAAGTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCACAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAGCTTTTCTTCCAAGGAACAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAGAAAATAGTCTGTCACTGTTTCCATTGTTTGCCCGTCTATCCTACCACCCTACCCCTGTCAACACATTTGTTTGCCTCTCTGTTACAGCCCTGCAAATAGGTACATCTGTACCATTTTTTCTAGACTCCACATGTATGTGTTAGTACGTTATATTTTTCTCTTTTCTTCACTCCGTATGACAGACTCTTGCTGCGGGGCTTTGTGTAAATTGCTTACTGATCCTGAGTTTCAATTTCCTCATTTGTAACCTGGGGCTAGCAGCAGTTTCTATCTCACAGGACCGTCATGGGTACCCAGGGACTTAATAAGTACAACATGTTGACCCAACACTTTCCTGGGGGCATCTGTGGTGGCCAAGCAGAGGGGTCTCTTGGTTGAGGGGAAGGGGAGGGGGATGGTTCTTCCCAGAGCAGAATGCAAAATGACCAGGCTGTTTGTTCCAAAAGGCTGACCAGCTCATCAGCTCAAAGTACAAGCAACATAATTGGGCCTCAATTATGTGTTGGGTTTTATGGTTGGGACAAGTAGGGGGTTAGTGCTGGAAACTTTCCTTGGGCCTGCCAGCATATCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTGTATGCGCGCACGCACTGCGCCAGGCAGCATGTGGAATCTTAGTTCCCTGACCAGGGATCGAACCCACACCCCCTGCATTGGGAACTCGAAGTCTTAACGACTGGACTACCAGAGAAGTCCCCCTTCCGATGTGTAGAGTGCTAAGAGAAGTGGTGAGGAGTTGGGAATTTGAGGCAAAAGACTTGGAATCTAGTGTGATTCCAATCTGAATGTAAGAGTTGAGAGAGGCCTTAACTTCTCCAGACCACAGCTGCCCTCTGTGGTCCCTGCAGCAGAGTTCAGGCTCTGGACAGTGGGCAGGACTCTGCCCTGTGAGTTGCCAGCTGCCCTCTGTGGCTCCTGCAGCAGAGTTCAGGCTCTGGACAGTGGGCAGGACTCTGCCCTGTGAGTTGCCAGCTGTCCTCTGTGGCTCCTGCAGCAGAGTTCAGGCTCTGGACAGTGGGCAGGACTCTGCCCTGTGAGTTGCCACTGCAGCCTGTGTTTCTGCTCTGGTTCTAGACTGACAGGCCTCCTAGCTGCAGATTCCCTCATAGATTCCCACACTGGTACCTGGTAATACTGCCTTCTCGCATCAGGAGACCTTGTGACGAAACAACAGCCTTGGGAACTCCATCATTCCTATTTGCTAGAGGGATTTCCCATTAGAGGTGCTGGGGAGTCCTACTGAAGGGCTTCCTTCAGCATGAACAGCCAGGTAAAAAGCCTGGCTCCCCCAAAAAAGGCTGGTATGTGTTCTTCCTCTTGAACAGTGAGGACAAAGTAACCTGATTTTCCTTTTCTTTTTGGCCACTGGGAGGCTCAACATTAAATGCAGAGCCCATGTCTGGTAGCTGCCTGAGGACCTTATGACCTGTTGATGTGAACCCGTCCTTCCTATCTGGTTTAGATGCTTTCTTCAGATTTTTTTTCCCCCTCTGCTCCTGATTTTTAGCATTTATATTTCACTACCTTCTTTTCTTCATGATCCTTGCCCTTTGTGGAACCAGGCTAGGGGTATGTAAAAATGCTCACCCTGTAAACACACATGAAGCTGTCTTCACAACTGCTTCGTTGGCATGCTGCTTTTTTTTTTTGCTTCCTCAGCTTCATGAAACTGTTAGAGTGATTGCAGTCGACTGGTCAGTTACAAGATGCTTGGGATTGGGCACGGTGGCTGTTTTTGCTTGTTTTTCTTTTCTTATCAGCTGCTTAGAATTTTTTAAATGATTTCCCTCCAAATCCACCAGTCACTGAGGGCATAGGCAGTACCCTGGTGGATAGATATGTGTGTTTATCTTCTTCTTCCTTTCCTTCTAATTTATTTCTTTAACATTGCACAAGTGTAACCTATAGAATCAAAAAATGATAACAAATGCAAAGGGAAAAAAATAACCTAGAATTCTACCAGGATACCACTTTTCAGTATTTTGTGATTCATCCTTCTTGACTGTTTTTCCCCATGTTTATGTTTTTCCCACAAAAAAATAGAATCTAACTATGTATAGTGTTTTTTCATTTTCATTTAATAGTAGATAACTAGTATCTTTCCTTGTTATTATATATTCTACAACAATGAAAGATACTTGAAATTTATATGATATATACATGCACATAGTATTTTTTTTTTTAAGCATAGAAAGACTTATTGTGAAAAGCAGTAATTGCCTCAGTCTTCCCCAGCCGCAGGCCTGGGTAAAAGGGGCAATTTTAATCATTTAGACTTCTTGTTACAGAGTGGTTCCCTCCACTTAAATAAAATGTTTACTCCACGATTTCTTGGTTTATTGGATTTACTGACTTGCCCCTAAGAAAAGTAAAGGTTTCCATCACTTCCATCACCCTTCCCTACTTCCTCCAAGCATTGTCTGCCTCTATATTTGGTTACCTTTGCAATTTAAAATGTAAGTAATATGCTTAAGCCTCAAGTTCTTGTTCTACAAACCATAGTCTCTTGTGGCCCTTATTCTCAGAGGCCCTTCCTCTCAGAGGAAGATATGGAGATGGCATTTTCCTTGATTTCCTTTCACCCCCAGCATCACAGTGCTTGTCTGGTGTACATTCAAGTTTCTGAGGTCAAGGTTATTAGCATTTACATTCGGTTTAATAACCATAAATCGCCGGTGAGTGACACGAAGCAGTGCTGAGACCTGAAGTTTGGCTCCCCGTGTTTGCATTCCTCTGTGACTCGTGATCGCTGCTGCCCACGGGAGTGGGCTGTGCTTACAAGTCCTTCTCTTTGGGTCTAATGGCACTCAAAGGAGAATGTTAAAGAGACTTTCGTTTCTTACATTCTGTTAGATGCTCAAAATCCATCACTTTCTATTTCAGTTCACTTAATATTTTGACCATGCCTTTCTTAGATAACTTTGCTTATTTGTCCGGAGTTGCTAATACAACAGCATTTTACCAGCTGCATAGTATTCCGGCATAGAAAGTGTTGAGATTTATTTTCACCCAGCCCCCTGTGGTTGGATTTGAGGTGATTTCAGTCTTTCATTAACATGAATGGTGCTGTAACTAATGTTCTTTGACATTCATCATTGTGCGTTTGTTTCATACATAATGTTTGAGAATCCGGGAGTGCTGCTTCCCCTAAATCTGACTGCCGGTCCTATGCACCCACTGCCTTGCTGATCTACCTTCAACCGCATCAGTCTGTTCTAGAGGTTGATGCAAGAGCGTTCTCAGGGGAGGAGTGGCCCCCAGGTAATGTCCATCATCCTCTCTCCAG
Seq C2 exon
GCTCTGAAAAGCGACCATTCCTCAGATTTGAAGCTGAAAACGTCTTCAACTACACATCCTTCCTGCTGAGCAAGGATGGCAGGACTGTGTACGTGGGCGCTCGAGAGGCCCTCTTGGCACTCAACAGCAGCGTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273:ENSBTAT00000028346:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0140314=Sema=PU(16.8=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]