RnoINT0132925 @ rn6
Intron Retention
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:141986145-142000790:+
Coord C1 exon
chr1:141986145-141986322
Coord A exon
chr1:141986323-142000626
Coord C2 exon
chr1:142000627-142000790
Length
14304 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTCCGATTTTCTCTCCTCAGACT
3' ss Score
9.33
Exon sequences
Seq C1 exon
ACTCCACTTGAGCAACCTGAGCCGGAGGACGCCGCTCCTGCCGCGGTCCGAGCTCCACGCGCCGCGATGGGCCGGGCGAGCCGCTCCGCCGACCTGCTGAGCGCGCTGCAGCTGCTGTTGCTACTGCTGCGGACGACGACGGCGCGGGCGCTCGGCCCACGGATCAGTGTGCCGCTGG
Seq A exon
GTAAGTGCTGTGGGGCGCGGCAGAGGGACGGGAGTGCAGCCGGCAAGATGCTTGGTAGGATGGCCACGACAAAGGAGGGTTGAGACCCACTAGGACCAGGAAAGCATTTCCCTTTCCCAAGTGCTGTGGTCAAAGCGAAAGGAGAGGGAAGCTAGGGAGCTGAGAGCCCTTTTCTTCCATTTTCTATCTGGACTCGGTGAGGGCCGCTCTCCTGCTCGGTCACACTTGGCACTGTTTGGGGGCCTCAGGTGCTAGCCATCCTGCCGACTCATCTACTTGTCTTTGATGCTGACCAGGGTCAACCGTGGAGCCACCAACGGCATGGGGCTGAAGGCACTGCTGCTGGCTTTGCTATAAACTCTGGACTTTTGATATTCTCAGGCAGCCACAGCAGAGCCTGGAGCTCGGCGGGTGGTTGCCAGGTCTTTCCATCCAGCCAGCCGGTCTCTGACTGATCGACCTGGAGAATTCACTCCTCCCACCCCCAAACACCGGGACTTGGAAACTGACATTATGAAGACCCATCTATACCCTGCCTAGAGGGACCTGAGGGTACCACTCTGGTGGGACAGGTTCCTTTCTTAGCGCTTCCCATCTGCCCCTGGCTGCCAGTGTTTCCAATCCTTCTGTCTTTCTTTATTTCCCTTAGTCTGATCGCCCAGGAACCTTCTGGGAACCTCAACTTTTGGAATTCTAGGGACTTGGGTCTTAAGCCCAGCAAGTACTTCCTACTACCTGTACTCCAGCTTCCTCACCTGCAAAGTCACCTCAGGCTTAGCCACCTTGCAAAGCCATCTCGGGAAATTTATGAAACTTGGTGCATTGGGTGGGCATCAGGCACATAGGTGCCAACAGACAATGCTTGGCCAAACCCCACTAAATTGCAAACTGTCACGTGTGAGGCACTGCATAAATTAGAGGTTATAGACTAAAACTCTAGCAGACTTCCTTCTTATAGCATCCCCACCCCTAAAAGCATCCCATTTGCAAAAGGATGGAATCAGCTCTTCAATTAAGGCCCGCAACTGGATCTCCGTCTCTTATCAGAAACATTACTGGTAGCTCAAGTTCAAATCTTGCCTCCGCTGCTTAGTTCACCTGTGACCTTAAGTAACAACTTAAGTTCTCTCTGCCTTGATTTCTTCATCTGCAAAATAGGGATATTAGCACCTTGCTCAAGGCTCAACTCATTACCAGTTGCAAAGTCCTGAGGATAGGGCTTGGTACAGAAACCTCTCTGCGGGTGTTTGCTGTCCTTCTTGTTATGTTAAACCTGGACCACTCCTTCATGGAACTGGATGGTTCACCCTGGGGTGGGGATGGTTCCTGAGTGCTTGACTGCAGCTCCTTGGGAGTTCCGTTCTTGGAGTGAGTAAAGACTGAAATCTGAACCCAGGATTCTTGCTCTGCTGCTTTAAAACATTTACTTAGCTTATGTGTGGGTGTGTGAGCACACGAAACACATGTGGAGGTCAGTGAGGTCAGAGGGCAACTGGCAAAATTGTCCCTCAGCCTTGTGGAGCTCAGGAATTAAGATCAGAATCTCAGGTTGGGTGTCCAATCCCTTTCCCGGATGAGCCATCTTCCCATGAGCCCCTCTCCCTGTTTACCCCATCTGAGCTAAGCATGGAACCCATCTTTCATTAGACATGTGCTCTACCTCTGAGCCATACACACCCCTCCCTGCTTCTGTAAGATCAGTGGTTCTCAGCCTTCCCAATGCTGCAACCCTTTAATACAGGTTGCGGTGACCCCCTCTCCCAACCATAAATCATTTTTGTTGCTATGTCATAACTGTAAATTTGCTACTATTATGAACTGTAAATATATGTTTTCCCAAAGGTCTTAGGCAACCCATGCGAAAGGGTCATTTGACCTCCAAAGGGGTTGAGACCCACAGGTTGAGAACTGCTGTCCCAGTCCCTTAGACCCTCTCAGCCTTCGGGATAAGGCAAGGGCTATGAGATGAGAACTCACATCCCACTTATGCCTTGAGAAGGCAGGACTAGCTTTTTGGGGCCATGCCAAACACAGTAGGTCTTGTGTCTTAGGGAGTGGTGGGAAGACTTGATAGGAGAGTAGAGAGGCCCTGCTTCCTGGGAGAACGTCAGTCTTTGCTTAGTTATTTAGCTCCAGGACCTGGCCAGCTTCCACAATTTGGTGATCAATCAGGGCTGCCACAGGTGGGCAAGGTATAACTTGTGCACTTTACAGAGGTATCCAGCTGAGGGGTTGCAAGGGCTTGCAGTCCAGGAACATGATTTTACTGTGTTTGGAGGACTGATTCTGTCAGGGGAGTGGAGATGATTTTTCAGCCTTCTCCAAACTCTGCAATGTTTCAGCAATGCCCAGCCACCTAAACCCTGGGTGTGCATCCACACGTGACTGAGCTACCATGCTATCACAGTGCTTCCTGGGCCTGCGCAGCAACCTTGATACCTGCTTCCACTCCCTTACCTCCCAGCTACTGGCAGGTCCTGTGGCTGGAGTCCCAAATGGGGAATGCCCTGCTGACAGAATAGGCTCACTCTTTGAGTCTGGCGTGAGAGTTTCCTGTCTCATCCCTGGGGGCTCGTTAGATGTTCCTGGCAGTGTACCCATCCTTGGCAGGCCCATAGTGACCATGGGTGCCTGGCCCAGGGCCTTTCATTCTTCAGACTCGGGCCTATCAGGGAATGCACACAACTGAGACCACACCCCTTTTCCCACCACCTGAACTGAATTCACACCCAGGTTCACGCCCAAGGATCTGTCTGTGATCTAAAACCAAGTCGCTTGAAGTGGAAAGTCTAGTTTACTCTGCATCTAGGGTCTCATGGAGAACTCTCATTCCTGTTGATGGTTCTTGGGAGCTCTGAGCTTGGAGGGGTACTTGTAACCTCACCTAATGGTCAGTAGAGGGAAGGAAGACCCAGGACATTTTGGGTGAGAGTTGGGGAGCAGCCATGAGGGTTCCTAACCCAACTGGAAGTCTGTGAAAGCCTTGCCTCAGAGAAGAGCATGAAATTTGGGTTCTTTTAACATGAAAACTCCAGGGCCGGTAATGTGGGGTATGAGCAGGAATCTGGCCTTGAAGAAGCAAAACAAAACTGCTCCCACAGCCTACTGAAGTCTGGTGGAACCACCTTATTTGGGTAATTAAAAGAGTTATTAATGTCTCCCAGCCCCAGAGACATCCTGCTAAAAAGCTCTGGAAACAGTGTATGAACCAGATTGGAATTAAATCTGTAGGCCTGCAAAATGCAGTTAACAAAACCCCATTGAATGCAGAGAACAAGGCACTTGGCACGAGTCAGCTGCCCGTCTGAGTCAAGGATGCCCAAGCGGCCCCTGTGCTGGCTGCTGCTCTCGTTCCCTCTTGCCTGCTTATTGACCTCTGCCTTATATGACCTCGGCTCAGCGTGAGACTTTGTAGTTTTGTCTTGTATGTTGGCCTGTTCGTGATTCTTCAGAGGCACGTGGACAGTGGAGAGCTTCAGAAATGGATGCTGAGAGCCAGGCTGGGAAAACTGGCTTACCACTCTCATCAAAGGACACGTCAAATAGCAAGCTATAGCCTTCTTAAGCCTGTATCCTTATCCACAGAACCAGAAGAAGAGCAGGGCCCATCTCCCAGGCTCCTGAGAGGATTATGGAAATAGCATATGTAAGGTGCTTGGCAAGGGTCCTGACACACGCAGCCTGCCCAGTGGAAGTCAGCAGCTTTTACTGCATGCCACCCTGCTCAAACCTACAAGCCTTACTCTAGGAGTTGGATGCTCAGCACTGCTCGGGATGCCTGCTCTGCCCTGGGGAGGAGAGACAAGCCCAGGTCCCAAGGGTTTATGGGAGGTCATTCCCATGGACTTGCTTAGGTTTGCCCCCACTTCAAGAGCTCCTAGTTCTTTTATTCTGTGGCTCAAGACCCTCCAGTGCTTGGGACTGGATTGCCTCACAACCCTCCCTGCCTGCCTTTTGCTGCTTCTTTTTGCTCTGTGATCTGTGGAAGTCATTCGGCTGGTGCTATGCCTCCTACACTTGTAGAGTGTGGGTGGAGCTTCTTGATACATACACCACGTAGCGTAGTCATCATCTGGTTGATGGAATGAATCTGGTTAAAAGGCTCCCAAAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAAAAAAAGGCTCCGCAAAGTCATGTCACCATTCACACCTCCCTGTTATCCCCTTGTCCTATCTCTGTGGCTGCTTAGGCTGTGTCAGGGCTCAGAAACTTGAGGTGGAGCACCCCCTGCACCCCAGGGGAAGAGGTTTAACGGAACTAGTCCTGTGGTCCATGCCTGCCCTCTCTCCAGTCAGCATCCTGGAGAGCACTATCTCATAAGACTGCACTGTATAGCCACTTTCCCCAGTTGGCCCTCCCTGCTCTTTACCTCTGCCCTCCCTGTCCTGGAAGAGTTTGCCACATCAGGAAAGAAGCCAGCTCCCCTAGGGGGGACAGTGTCTTGTCACAGGAAACTTGCTGCTTGCCATTCTGATGACCACAAGCCTTTCTTCTGCTGCTCACACTTGCCCTCAGATGTCTCCTGGGTCACTGTTAGCCCCATACTTATGTGATCATCTCTGCCACGAGGCTTGCCTACAACCAATCAGGATCATAGCTGGTGTTCAGCCTTGGGAACCTAGGAGATAGTCAGCAAAGTGAAGGGTATAGCTGAGGGTCACAGAGGGGAGTGATTTATCCACTTCAGGGTGCTCCTTCCTGAGCCTGTGATCCTACCTAGAGCCTGTCTGGAAGCCCGTCATCTAGAAAGTTAGGAGAGGCCTCAGGGAGAGGCTTGGGGTAGGTGTGATAGGTGGGAGCCCTCGTTCCTCTTTTCTTCATAAGAGTGGCTAAAGTGGCCAGTGGCTACCTTTGGGACTTATTTTTACCCCCAGTGCTAGAGCGGAACCCAGGACCACAGATCCTCCTATCTGCTAAGGAAACACTGACATTGAGCTACCGCCCAGCCCTGGCCTCTCCTCACTCATTCTGTGGAAGAGGAAGACACCATCCATTTCCAGTACTCACTGGGCTAGGCTCACACTGACCTGTGGAGTTGTATTGTTTTACCCAGCGTAGAAAAATGTTGAGATGGGTCACTAAAGATAAGAGACTGTGCTTGGGCCAGTTTGTTTCTTGACTCGGGAGCCTCATTCTTTCTTAGAGAACAGTAGCTACCTCTGGCTTCACCTACCAGTTACACAAAAGCAGCCAAGTGGCCCAGCGGCCCAGCTCAGCCCTCTAGTAATTGATCAGCTGTGTGAGTCCATCTGGTAAAGAAGTCTGTTGAGGTTATCCTTTGACAGAGCAGACAGAACAAGGCAGCCAGCTGAGGCCCCTGAAGGCACTGTCATATTGGATGTCAGTGGACTTGGCAGGGAATGAGGGGCACACATCAGAGGTTTGCACACTAGGGGTGATGGCCAAAGCCAGCCTGTGGATATATTTCACTTGACTTCCAAGTGACTTAGAAATTTTTAATTAGTGGCTGATATTGATATTTAAAACTTAGGAAATTTTGTATAAATATCCAGATTTCTGGCTGTAGGGGACTCTGGCAACACAGGGCCCCATTTTCCTAGCAATAAGCAGCTGGGGCTTAGCAGCCACCTCCTCTTTCAAGGACCTCATGCCCATATGGTTACATTCATACCAGTTCTGTTTCCCCTGCCCTGGTGGCCCCAGAGACGCAGATGTTACACACAGAAAGCCTGCTACACGTGTGTGAAAAGGTTAAAAGAAGGAAGGAAGGACAATAGGGCAGGAAGAGGAGTGCTGCAGCAACAGTCTGTTAGTCATTGATGCCCTCCTGCAGGCCTTCCACCTCAGAGGCAGGTGGCTGGCCCCAGATTACACAAACGGTCAGTGATGACATCAGGATGTGCTGTGGCTTTTAGGACTTCCTACCCATTACCCTGCATCTCTGTGGCTCATTTTCCACTTCCTGCACCATTTTTAGCTGCCACCTGTCTCTCTGTGGCCTTTGGGTGCGACGACTGAGTGAGCTGCCGGTGATTGGAGGGCTCACACACAGTTTGGAACAAGAACCTTTAGGACCTACGTGCTGACCCCTATCAGTGTAGGGCTTCTTTCTGGGTGGAAGCACCTTTAAATGAGGGACTCTGTTTTTGCTCAGTCAACAAACATTCGTAACACACCTCCTTGGAAGTCACCTGAGCAGGTGATGTGTGTATGGGATAGCAATGAGATTTAGTCTTGACCCTGACTGCCCTTCTGTTGGGTGGGGCAGTCAGAGCCAGAAGCTTACAAATGTGAAACAGTGTCTCCTGAGCCTGCCACAAGTGTGAGGTGTACGACAGGCCCTCCTGAGTGTGGGCAATTTTGGAATTTTGGTTTATTTAAAAAGCATAGAAATATTACAAAAATATGCTTTTGGTTTAGTCCCAGGTATGGGAGGTAGGACTGCTTCAGATTGTCCATGGCAGCTGACTATGCTTTGCCTCGAGCTCTGGCAGGGGCGTGATTTTGCCAGCTACAGATAACTTCTGCAGTTGTGTGACGATTGGCATTCTGGGCACTTTCAGAGGGTTATAAATGCTAGGGACCCTCAGGTGTGGTGGGTTGTTTGTTAAGTAGTTGTGTGCAAAGAAGAAACAAGAAGAAATCAGATATCCTGACTGTGAAGATCAAACTTGCCCCATGAAACGTAATGCCTCTAATCAGCAGGAAGTAGTCTGTCTAACAAGAATGTCCCCCCCCCCCCCCGTTGGGCATTTAGCTCAGTGGTAGAGTGCTTGTCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCTAAAAAAAGAAAAAAAAATGCTGCCCCCTTTTTCCAACCTCTTAACTTTATTCTGGGATCTCTTTCCTTTTCGCTCTATCCTTTTTTTCTCTCCTATCTAGTGTTAGGCGGTTGAAAGGATGGAAGAAAGAAGAACTAAAGAGTAGCCAAAGACCAGCCATATACTCTTGTGTGGCTGGAGATTCAAGAAGGCCATAGAGGAACCCATAAATACAGCTTAGTCAGAGGGGAGACAGCAGCACAGAACTGGCCGTGACTAAAGCACCCTTGAACTTCAGTTCTGTGTCACTCACTAAATGGATGGGGGCATTGGGTGATGTTCCACTGTGGCAGGCATTGTGAGGTGGTGGTAATTCGTGGAGAGAGAGCCTTTCAGCTATAGTAGGGGGCACCAGGAGACTGTAGTAGCTGGGGTAGGAGAAGTAAGGGCCTTGTTCAGGACTGTGGCTGTAGACTAGTGATGTGGGGCAGATTAGGAAAATTCAAAGAAGAGGTGACATGTGGCTGAGCTGAATGGTAGGAAGATACTAGATCCCAAGACAGGGTGAGTGGCACAAAGGGGCATGAGAGGGGCCCACATGAGAATGTCTTTGAAGTAACCCATTGTGCCTAGGGGCTCACCAGAATTTAAGTGTGGACATGTGGCCCGTCTCAGAGTGAGACGACCAAGAGTAATACATGAGGGAAAAGCTTGAGAGGCCAAAGAGTGGTTAGCAACACAGACAGGAGCTGGGCAGCACAGGTTCCTGTCCCACTCTTACCACATACCCAAGCGGAGAGCAATCCTACCCCTACCCCACTTGAAGGGGATTGTGGGACTGAATCTGCAGAGCCCAGGGTATGTGAGGAAGACGTGAGTTGACCCTTGAGCCTGTGAGCCCTGACACCTGGAGGCCAGGCCATGGGGTCTACTGTTATCAAGTGAGACATTTCCTGGGTCTTAGAGGGTTCACCCACCAAGTATGGGCTGGTTGAGGCCAGTTTCCTGGAAGAGTGTGTGGGAGGTGAAGAAAGGTGAAAGCTCTCTGGAGGAGTTTCTAGAAGTGCTTTCTGAAAGGGAGGGCCTCCATGTGTGATGAAACTGGATGTTAAGGTCACTGTACTCAGTGGCCCCTATTTCTTCAGAAAAAACTGGAGACCTCCGTGAGGAAGGAAGGAGGTGGGTGGGTAGGAGGCTGGTGTTTTCTGGCCTTATCCTGCTGGGGCCTGTGGAAGACAAGAAGCTAGGGCCAGGTCAGCATCTCACACATGGCTCAGGAGTCACAGAGCAGAGCAAAGTGGGACTCTTGAGTCAACACAGGAGAAGAGAGAGAGTGGCCAGCCACTGAACAGAGGGACATAGGAGCTGACCATGGTCCTGCGTGGGTAGAGGGGTTGGGCCGAGGTCAAGGCCTGTAGGTGTTGGAACAGCCTGTGTAGCTGGGACACAGGTCTTGTGGCTTTGGGGTTCTGACGGGTTGGCCAGTTGACACAGGGACAGTTGGAAGGATGGCTTCCCAGAGTAAACGCACCCCATGAACAGAGCTTGTTCACGCTCTTGCTCTGGCTTTGGTCTAGTACTGTTATTATTAATAGTTTTGCTTTTGGGTCAGGGTCTTGAGGTATAGCCTAGACGTCCTTAAGTTCTAGACGTCCTAGAACATCCTAGTAAGTTCTTCCTCAGTCTTCCAAATGCTATAAATGCTTTCTTTTTTGAGGGGTGAGGGAGCGGGTTGAGACATAGTCTTGTGTAGTCCATGCTGGATTCATATTTACTTTGGAGCCAAGGATAACCTCAACCTTCTGATCCTTCATACTTTTACCTTCCATAGTGCTAGGATTACTGACTACTGTACCGAGCCAACAAATGGATTCTTGAGGACTTCAGTCCAGGGGAGACTTTGGCATACAGCCGTCTGTTAGCCACCACACTGGGACTAGCCCTCTTTTGTGGACTTTGTCCTGACCTTAGCCCAGTGAATGTCTCCCTTGCTTGGCTCCCCACTTACATAGCCTGGGGACAAGGTGGCTGCTTCCTGCTCAGTACTGGGTGGTGTGGAGAAAGGAAGTGCATATAGGTCAGTTTGCTGCTGACTGTAGCAAGCAGGTTCAAGGTTCATGATGTCCCTGAGACACCCAGGAGGCCTTGCTCTGACTCTGCAGGGAGGCTGGTATTTTCTGGCCTTATCCTGCTGGGGCCTGTGGGGGACAAGAAACTAGGGCCAGGTCAGCATCTCACTGGTGGCTCGGAAGTCACAGAGCAGAGCAAAGTGGGGTGGGACTCTTGAGTCAGCACTGTCTAGGGTGGGGCTGAACCCTATTCCTGTTTTAACTCAGAAAGTTCCACGCTTCCGGCTGAGTCACAGGGGTAGGGAGAATCTCTGTGAGGCTGGGGGCTGAGGAGTTCCCACATCACTTCCTGCTAGGTTGGGGTGTGGGACCTTGTAGGTGGTTGCCCTAGAATCATAGCCCTATTCTACTTTCTTGAAGGATGGGGTACTCATGGGGAGCAGGCCCTTGGGGGAGTCCCAGCTCTTGGGCAGCCACTGGCTCAAGTTGCCCGGGGCCCATAGAGAGGTTCCATCCTGATTGGGACAGCAGCCATAGTTTGTAGTTAGAGGCTAAAACCCAGGTAGGGGAACAGGGAGAGTATCTGAGCCATATTCACAACCAGGAGACCAGGTGGAACATGCTCTTTGGCACAACAGAGAACACACACACACACACACACACACACACACACACACACACCCCTACACACCTACACACCTCTACCTCTCCAGTCACCTCTGCACAAAGAGCACCGGGAACTCATGCACAAGCCTGGACAGGCCTTGAGGTTCCGTGCACATAGGCACACAGACACACAGACATGGGCAGGCTCAGGCAGGGCCCTCTGCACAGACGTCTACACAGTCACTCTATTGAGGTGGCCCCAGACACATGGGAGTTTGGGTAGTCACAGCACCCAATGCATGCCTGTAGCACACATCCTGTTTCTAGCTAATCTGCTTGAGACCCTTGTGAGCCACACTCAGACTCTGGTGGAGTGAATGGACTGATGCTGTAAGCTCTCAGCAGGGAGGCCGCACCCCCTGCCCTGCCCTCTGTGGCTTGCCTGGCTGGATTTTCCTGCAGGGCTTTTGGATTTTGTTTTTGAGCTACTCGAGTGTTGATCGTGTGCCAGGCACCGTGCCAGCGCAGGGAGCGTGTGTAAAGTTGTTTTGAGTGAAGCTCTCGGTAAGTGTGGGTTATTATGTACATTGTTATTTACATACGTAATCTTGCTCCTTCTCATAACAGCTCCATGAGGCAGAGGGCTATTATTGTCCCCATTTTGCAGATAAGGAAAGTGGGGCTCTGAGAGGTTAAGTGTCTTGTCCTTATGAGCGGCAGAGGCTGGATTTGAACCAGGTCTTTGACTCCAGTATATGGTCTCAGTCTGCCTTGTGAGATAACCAGTGGCCAATAGTGAAGTCCACAGCCGGGATCATTAGCGCACCGTGACTCTTAAGTCTGAGGCACAGGGTGGAAGGGAGGAGGGCTGAGGGCAGGGACGGAGGGCGGTCCCAGCATGAGAGGGCATGTTATGAAGGCACTGTGCTCACTTTCCATCCCATGGTCATTCTGTTGAGTGTGTTCCCAGCAGATACGGAAAGTCTCGGACCGCTGGCACCCAGGCTTCCCCTCCAGCCTGGCCTGACTCTGTCTGAGGGACCCTGGGCAGCTTGCCATCCACGCAGGCAAAAGTGGAGGGGATGTTGAGCTGCCACCTGGAACTTGTGCTTATCTTGGCCTCTTGGCATTTCTGTATCTGGACAGAATCCAAGGGTGGCTTCCCGCTTAGAGCTGTAGGTCCCACCCAGGTGGAAATGCCCTCCGGAGCAGGCAGATAAGCTCTGGCAAACCAGAGGCAGCCTACGTTTCCAGAAAACCTTGAGGGGTACAAGAGATAAAGGGGTACAGGAGCTGTGTGCTTGATGTCGCTGAGCCTTCGTGAGGCTCCTGTGAGCTGCACTTTTTGTCTCGTCCCTGTGATAGACACAAGAAGCCACAGTGAATTCAGTGGGTATCATATGGAAGGGCCTCCTTGGACCTTCTCAGAGTAGTCCTTGGGCCACCTCCTTCTAAGTTACTGAGAGCTGGTCAAGAGGCTCAGACCAGCAGTTTCAGAATCTCTTGGGAGGGCCTGGAGTCAAGGTACTGTTTAGGGAGATTGGGATTGGTACTGGAACTTTCCTTGGCCTCCCAGTGTATTCAGTACTAAGGGTTGGAAGTCTCGGGTGCTACAAGAATTAAGAGTTTGAGAAGAGGCTCTTGGTAGTTTAGAAAGAGAGAAGGACATCTTTGGGTTTCGACTACCTGTGGTGGCAGTGTCAGAATTCAGGCTCTGGCCTCAGGCAGGACTGTTCCTTAAGTTCTAGTGCAGCTCCCTGTGTAACTCTGGGTTTTAGGAGTACGACAAAACTTCAGCCACAGAGACACACACATTTCCTCAACCTTCTGCACCACATCCCTCTCCAGGAGCAGCTGTGAGCCCCTACTGTCTAGTGACTGGAGGTGTTACCTATCCCATGTGTCTCAGCAGGCTTGGGGAAGCCTACCTGAGAGCTTCTTCAGCATCCTGTGCTGTGTGGTAAAAGGCTGAGCTTCGGTCAAAGAGTTGGTGTGGTTTCCTGTTCTTGAACAGTGTGAGAACCAAGTGTTTTCACTTCCCCTTTCTCTGTGGCTCCCAGGAGTCTTGATGCTAAATGTGCAGCCCACCCCAATAGCTGTGTGAAGATCCCATGACCTGCTTACGTGACTGCTGTCTCTCTGGCTTAGATGTCTTCTTCAGATTGCTTTTCCTCGGCCTGCGATTTTAATGCTTCTCTTTCAACACTTTCTTGTCTTTGCGTTTCCTTACCTCTTCCTGGAAGCAGGCTGAGGGTATGTAAAAACACTGGACTTGCAGACACACATGGAGTCATCCTCACATTGCTTGGCTGGCATGCTGCCTCATGGCTTCCCAGCTCTGTGAGTCTGTTTGTTTGCATGGTCCTGAGCCACTGGTCAGTTGGGACATGCCTGAGACTGGTCAGGGGCTGCTTTCTGCTTGGTGCTGTTTGTTTGTTTGTTTTGGGTCTGTTTTAAATAATTTCTCTCTGAGCCCATCAGTTGTTCAGAGTGTGAACACACTGACTAGCCATTGGGCTGAACACACTGATGGGCCAGTGGGCGTTGATTGTTTCTTTTTCCCTCTTCAATTCTCATCTTTTACATTACGTAAGAATAAGTTGCTTACCCTGAAACCTCAGAATAATACAAGAGGGAAATGCTCACGGCTCCTCGGGTTCACTGCAGTGTCCCCTGTCTGGGTTGTTTTCTCATTCATGTTTTTTTCCCACAAAGGGAAATAATCTGCCCAGGCATTCTGTAACCTTCACTTTTACTTAATAATTATTATCTTCTAATAAGTACATCTTCTGCAGCAATGAACAGGTTCTAAAGTTTTCTCGAGTTGTACTGTGTCTGTGTGTCTGTGCATCCGTATATAAGTAAGTGCAGGAAGGCTCAGTGGGTAAAGGCACCACGGTTAGCCAAGCCTGCCAGTCAGATCCAGTCTCTGGGACTCACATGGTGGAAGAGGGTACCGATTCCCAGAAGCTGCTCTCTGATGTACACACTCCACACTCCTTTAGATGTTAAGCAGGAGAGGCTTTGCTGTAAGAACCCACACTGTCAGCCGTTCTGTACCTGGTTCTCTGGGTCATCGAGAGTTCCCACCCTGCCAGTGTTCCTGTGGACAATGTCATGAGATGCTCACACCACCATTTCTCGTCTCTCATCTCTCAGTTTACTGCAGGGACGAATGAGGCTTTTCGTCCTCCTTGCCCATCCCTTCACGTTCTGCGCTTTCCCCTCCTTGCCACTTACAATAATACCCTGCCTGGGCAGGCTGACACGTTCTTGTCACCCAGCACTCAAGAGGCTGAGGCAGGAGAATCATGATTTTGAGAGTAGTCTGGGCTGTGTAACAGAGCTAGCCCCAAAAAAAAAAAAAAAGCAAAGCAAATTCCATTTGGCTAAGGTTATATACTTCACAGCGGCCTAGGCTGGGTCATCCACAGTCAAATTAACAGCACACTTAGAATACACGTTAACATTTTATTTTCAATGTCTGATGTAATCCTCACTTGTGTGTATCTGACATACAGTCATGTGTGCTGTTAGGGACCCAACCCAGACACTTACATGTTAGATAAGCATGTACTGGACCACACCCAAGCCCTGTTAGCCTCGTACAGCATATTGTGACCCTCCTTGCTCCTAGGAGGGACAGCAGAGTTTCATTTCCACCCCACTACCACTCCCCAACAGGGGATCTGGCTGGAGGCAGAATCAGAGGGAGAGGGCTGCCCCTGCATTTCCTTTCGTTGGTCAGATGCTGTGCAAAAGGAGGATGTTAAATGTTTCAGCCCTTCTCTGCATTACAGTTATTTATTTGTGTGTGCGTGCACTCTGCCATACTCACGAGGGAGGGGGCAGATGACAGCATGTGGGAGTCACTGTCTTCTACCGTGTGGAGCCTGGGTATTGAACTCAAGTGGGAAGGCTGGTGGCAAGCATCTTGACCCACCGAGCCTGCTCTTTCTTACAGTGTGTTACGTACTTGTCACCCATCACTGTATATTTTAATTTGCTTCATATTCCCCGCCCCTCTCAAAACTGGGCCTCACTTAAGTAAACCCAGACTGGCCTGAAACTGCTAATTCCCCTGCCTCATCCTCCCGTGTGCTGGGATTGCAGGTGTGTACCATTACACCTCGCTAGAGTCTGTATCTCTTACACAATTTATCTGTGTGTTTTCTGGAGTTTCTAATCTATGTTGCTTTTGCACGCTGGGTTATATCCCATTGAGTGGACTATTATAATCTATTCTCACCCTACCTCGGACTCTTAGGTTTCCACTTTTTTTATTAAAAAGAATTATAATGTATAAGTACACTGTTAGCTGTCTCCAGACACACCAGGAGAGGGCAACAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTAAGAATTGAACTCAGAAGCGCAAGGCCCTGGGTTCGGTCTCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACACTGAGCCATCTCTCCAGTCTGGTTTTCCAATCGTATGATTGAAAAAGCTGTAATTAATGTTCTTCTCCGTGTACCTTAGTGCATCTCTATCTTATGTCTGAGTGTCGGGAATGATACTCTTCTTTATAACCAACCTATTGCCTTGGGTCCATGCTACTGACTGTCCTGCAGATCTCCCTTAGACTAAATGCAATCATTCCTAAAATGGACGGAAAAGGCGATTCTCAGGCATGTCCGATTTTCTCTCCTCAG
Seq C2 exon
ACTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAAGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCCCTTAACAGCAACCTCAGCTTCTTGCCGGGCGGGGAGTACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167:ENSRNOT00000030914:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0140314=Sema=PU(8.4=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]