GgaINT1024724 @ galGal4
Intron Retention
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19528710-19531474:+
Coord C1 exon
chr10:19528710-19528889
Coord A exon
chr10:19528890-19531313
Coord C2 exon
chr10:19531314-19531474
Length
2424 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCCTCGCTGTCCCCCTGCAGACT
3' ss Score
11.19
Exon sequences
Seq C1 exon
GTCTGCAGTGCCCGGGGCGGCTTCGCGGGACGCGGCGGAAGCCCGGCCCGGCCCGGTTCGGCTCGGCTCGGCTCGCCATGGTGCCGCGGCCGGCGCTGCCCGTCCTGGCGCACTCGGTGCTGGCGGCGCTGCTGCTCTCGGCGGCGCAGGAGCCCGTGCCGCGGGTCAGCCTGCCCTACG
Seq A exon
GTGAGTGTGTCCGCCATGGGGAGGGGTGGGCTTGGGACCGCCCGAACCCCCGCGCCCGATGGTCGCCTCCGGGGGGGAGGGGGGAGGGTTGGGAGCCCCGACGGCGGGCGCTGCCCCGCGCGTCCCGCGGTACCGCCGGCCCGGGGGCGCGGGCTGCCCTCGCCCGCTGGAACGGGGTGTGGGGCGCGGGGTGCGGGTTGGCCTCCCTCGACCGTGGGACGGAGCTGGCCCCGCCGCTCCGGCGTGGAAACGCCTTGTGACAGCCCGCGGGGCTCTGAGCCTGCACAACACTCCCAGCCGGCCCGGCAAGCTGGGGCTCGCTGCTCCGTGGGTGCCGGTAGCGGGGAGCAGCGGCCGGGGCGGGTGTTTGCGTCCCCGTGTGCGGGGCTGTGGGGGCGTGGGAGGGGGCAAGCCGGCCGCGGGGGATTGTCCACGTGCTCCGGTTGCACTGCAGCAGCCGGGGTTGTTGCCTGTGTGACCCCCCCCACGACCACGCATGCCGGTGCTCTGCTCAGGCTCTTGCTACGCCCGGCCGTGGGGACTCCGGGTCCTGCTGACCCTGCTCTGTGCCGGTGCCAGAGATGGACAGCCCAGGATAAGCAGGGTCCTGGCAGGCAGAGCCCCCTCACCCTGCAGGGCCGTTCCTGGCCGCTGCCCGTGGCCGTGTGCCCGCAGTGACATTGGAGGTCAGTATCGGGACGCTGCTGGGGGCAGGTGGGGCCGGCTGCCCTGCCTGGCACTGCAGCTGTGGCGTGGCGTGGGCGGCCCACAAGTGGTGAGGCTCCTTGAGCTCCCAGGAGGTGGCCAAATCCAGCTGCCGCTGCGAGCAGCGTCTGTCCTGCGCTGTCTCCTGGCTGGGGATGGCTGAGAGGGTGCGGTGGCTTTGGGTCAGGATGGTTCTGGCACAGGAACGCTCCCTGGCTCCGTGCACTGAGCTTCTTTGACGTGGCCGTGGCCTTGCCACATGCTCCTGGGACCGCCAGCCACGGCCACGGTGGCACCAGCAGATGTGAGATCTGCTCAGTGGGGTGGGATGGATGGGAGCCATGGGAGGCAGCGGGACAGCCCAGCCCAGCACTGTGTTTTGCCACATTGTGCCTGCACAGACCGGTTCTGGCCCAGCTCTGCCCTCCTCCAGCTGGTGCTCGAGCAGTCGCTGCAGCCTGGGCTCGCGGCTACAGGGAGAACCTCGGGGTCCTGACCTGGATGCACCCTCACCACAGGAGCGGGTGGGGGGGGCAGGCTGGCCAGTGTGCACTGCACCCGGCGGTGGCTCCTGTGTGGGGCTTGTGGTTGGCAAGGGGAGGAGCAGGCGAGCTGCTCCTCTTGAGTGGCGGGATGTGCCTCCAGCAGGTTTGTCTGGAAGAAGCAGGTCTTGTCCTAACAGGCCCCCTGGCAGCCACCACAGGCTTCAGAGCTTCTGGGCTGGGTGAGCTCTGCGGGGTGTAGGGGCCCCACTGCCCTTCTGCGCTGTGCCCGCCGTGAGTGGCATCACCCTGATGCCCAGGCATGGGACCCCGTGGGGGGATGCAGCCCCCAAGTGCATCCCTATTCCGCTGCACTACTGCAAGGTAGGCCGTGGCTTAGGCAGGCACTGAGCCAATTGCCCTGGATTGTACCCAGGCTGCCAGGGCTGGGGAAAGGCTGCGCCACACAGCCCTGCACTGTGCCATGCCTTCTGGGGAGCTCAGGGCCCTCGCAAGCATAGCAGGGCTGGTGCCAGCGGGGAGCTTCATTGGGAGTGCTGTGTCCCTGTGGGGCCGTGACAGCATCACCGCTGCGCTCCCCGCGGTGACAGCAGGAAGTGGGGGGAGAAGCAGGGTTCTGCCCCAGCAGTACTGCTGGCACCGGGCAAAGCTCATGGCAGCTGACACCGGGCAGGGCTTCGGGCAGGTCGGGGCTTCCCGGTGAGCTGTGGGTCAGGGGTAAGGGAGTTGGCAGCGTGAGTAAGCCCGACGTGTCCCGCTGACACAGCTGGGTGCTCTGATTCAGAGGGCTGCTGGCTGAGAGGAAGAGCTTCCGGGACTGGGCCACCCACACGGGACAGGCTCTGCCTGCCCTGGCTGGCAGCCGCTGCTCAAGCCTGGTGCGGGGAGCTGCTGGGGCATGGCCAGGGAGCTCTGCCCCCAGCTCCACGGGCAGGGACCCCAGGGCTGGGCAGTGGGGCTCTGAGCCCCGGGGCTGTCCCCAGGGGCCAGGATGCCGCGGCAGTTCAGACTCTGCCCTCAGGTACTGTTACGGCCGTGTGCGGTTTGTGGCGGTGCCGAGGTGCAGCAGCCCAGCCCACACTGACAGCCAAGGCCGGGAGATCGGGTCCTTCTGCAGCATCCACTTCCTTCCGTGCTTCCCAGCCAGTGCAGTGCCAGCGTGGTGCTCACGGCCCCAGGTGCTGTGCGGTGCTGATCCCTCGCTGTCCCCCTGCAG
Seq C2 exon
ACTCAGCTGAGCGTGTGGTGCAGCGCTTCGAGGTGCCCGGGGTCTCCAACTACACGGCGCTGCTGCTGAGCCCGGATGGTGGCACGCTGTACCTGGGTGCACGTGAGGTGCTCTTTGCTGTCAACACCAGCCACTTCCAGCACGGCGTGCTGGCCCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297:ENSGALT00000013511:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0140314=Sema=PU(8.2=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]