BtaINT0131732 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68249647-68251303:+
Coord C1 exon
chr17:68249647-68250414
Coord A exon
chr17:68250415-68251169
Coord C2 exon
chr17:68251170-68251303
Length
755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGACAGTGCCTTTCCTCCAGCTC
3' ss Score
6.92
Exon sequences
Seq C1 exon
ATGAGCCCCCGGAGGGAGATGCCGGCCAATCAGATACTTACCTTCTGCCCTCCGAAATCCTGGGGAGCAGCAGTCTGAGCAAGGAGAACCCCGAAGAGAGCGTGACCACGGCCCCTCTGAATCCAGTGCAGTCTGGGGATGAGCTTCGCGAGCCGGAGTTGGAAGGGACCGTCCCCTTCGCGCCTCAAGACCCAGCGGCTGTGTCTACGCTGCTTCCGCTTCCGGAGGAGCCGGGCACCAGGCACTCCTTCCCCGCCAGGAAGAAGCCGCCTTCGCTCAAGCAGGTGAACTCGGCCAGGAAGCAGCTGAGGCCGAAGGCCACGCCCGCAGCGGCCACGCAAAGGACCGCGTCCCAGCCGGCATCCCCGGGCCCAGTTCTGTCCATCGCCCCGGGGAAGCCCCGCCCACCCGGTGACCAGGACCCCATGGCCTCCGCAGGGGAGGAGACCCGCCCGCTGTCTCTGTCCTCCGAGGAGCCCCTCTGGCTGGAGCGGAAGGAAGGCGCGGTCCCCACGACCCCCGCGCCCCTGCAGATCGCCCCCTTCACCTCGCAGCCGCTGGTGGCCCACACGCTCCCCCGGAGCCCCGACCCCGGGGCGCCGGCCGTGCCCGAGGAGGCCCCGGAGGCTCCCCCCGAGGATGCAAGCCCCGTGACGGTGATGGACAAAGGGGAGACTGAGCTGACCGGGTCAGCCTCAGAGGAGAGCCAGGAGACCACCACGTCCACCATCATCACCACCACAGTCATCACCACCGAGCAGGCCCCAG
Seq A exon
GTAGGCAGCCCCCAGCCCCTCCGGCGCTGCAGCCACTGTGAGGAGGCAGCTTCTGCGACGCGGGGAGGGAGCGCGTGGGGGGAGGGGGGCCCGGGAAGGTGCATGCCCTGCCATTGGTTACCATCTATGCAGCCCTAGCTATGAACTTGACCCTGGGGTTCAAAACTAGCATCCCCATTTCAGAGATGAGACCCCTGAGACCCTAAGACATCAGACAACCTGCCCTAGGTCTCACAGCTGAAGAGCAGGGTTCAAAACCGCTCCGCCAGGACAGAGTCCTTTCACCTGCCTAAAAAGCCCTAGCCTTCCAAGGTGCTTTTGCTCTCCCCGCTCGTGAACTTGATAGAACACACTTCCGTGTTCCAGTCTTTTCTTCCGTCTTCTATCCCATCTTCAAGCGCATCACAGGGGCATCGGCTGTCAATTACACGTTGATCTGGGACAGATGCAATGTGGCTGCTCAGGAAAGACTGGGAGCTCTGGATTTTTGACCCCTGCTCATTGTGTGACCTTGGCCCAAATGTGTTCCCTCTCTGAGCTTTGTTTTACTTGTCTCTAAGAGTGAAACATCAGTCCCGTGTCAGCTCTTGCCATTTGATTATTATGTTGAGTGTGGAGCTGAGGAGGAGGAACAGCAGGGGAAGGAGCGGGGATGGGAACACCAGTGTTCAGAGGCCCTATTCCAGCCAACAGCCCACCTGAGAGATGCCACCTCAGCTCTTCTCTGTGTCCTGATGACAGTGCCTTTCCTCCAG
Seq C2 exon
CTCTCTGCAGTGTGAGCTTCTCTGACCCTGAAGGGTACATCGACTCCAGTGATTACCCGCCGTTGCCCCTCAACAACTTCCTGGAGTGCACGTACAATGCGACGGTCTACACTGGCTATGGGGTGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569:ENSBTAT00000008629:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(39.6=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCTCTGTCCTCCGAG
R:
GGTCAGAGAAGCTCACACTGC
Band lengths:
342-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development