RnoINT0133930 @ rn6
Intron Retention
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50189528-50191448:+
Coord C1 exon
chr12:50189528-50190085
Coord A exon
chr12:50190086-50191314
Coord C2 exon
chr12:50191315-50191448
Length
1229 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
CAACGTTTGTTTCATTGTAGCTC
3' ss Score
7.66
Exon sequences
Seq C1 exon
ATGGTGGTCCAGAGGGAGACATGCACCCTTCCACCGCCTACCTCCTGCCCTCTGCCTTGCTGGAGGGCAGCCTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCCCCTGCCATCCCGGGAAGCACTGGAAGCACTAGAAGGGTCCTTGCCCCCTCTGTTCCCCGATGAGGCCAGAGTCCAGCATACCCCATCCCTAAGGAAGGCTCTGCCGTCCCTGAAGCAACTCAACTCAGCCCGGAGGCAGTTGAGGCCCCTGGCTACCCCGACAACTCTGCAGAGACTGGGATCCCCTTCCTCGGCTACCACGAAGCCACGTGAGCCTGGAGACCCGGAGCAGCCTACAGCGCCTGCGCCACTGCAGATCGCACCCTTCACCGCTCTGGCTACTACACTTCCACACAGCCCGCAGCCCGCGCAGGCCCCCGATGACAGCAGCCTCAGTAGCCCGCTGGACAAGGGTGACAATGAGCTGACCGGGTCTGCCTCTGAGGAGAGCCAGGAGACCACCACGTCCACCATCGTCACCACCACCATCATCACCACGGAGCAGGCCCCAG
Seq A exon
GTATACGAGGCTCATCTCCCACCCTTGCTGTCCTTCATTTCTGGATTCTCCATAGTGTGTGTGGAACTAGAGGTGGGGGACATGCTGTCACTGAACAGTCACTCCAGCTGTCTTTTTTACTTTGTTTTTGGTGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGTGTGCATGAGCATTGTAAAGAGAACTCAGGTCTGGCACATAGCTAGGCAAGCAAGCGCTCTACTATAGAGCCACACATGCAAAGTGCACTGACTTTTCCCGTCTACTGGCTGTCCCTTACTTTGTCCTCTTCCTCCATACAGTAAACCAAAGTATTCAGAAAATTTAGTTGTATCAGTCCTGTGAACCCCACCCCCCAGACTTCTTCTTCCTATTTCCTAGACACTGCTCACACAGCGTTCTGCCGTCATGGGGCTGGGGATTTCTTGTAGGTGGTCGAGAGCCTTTGTAGGGAGGATGCTCATTTCCTAAACCTTTCTATGGAAGGGCCTGGAGCTTAGGTGGAGGCTGATATGCAAGGGAAATACGGAGACCCCCAGCAAGATGTGGATGGATTGCTGAGCCTGATCTCCCAATCTGGGTTCTGTGCTTCTCTGTGTTGGGGCCTCACCGGTCAAGCTCGCCTCAACTTGGCTGCTCACTGTGCATGGAACTAGAGTTCTCCGTGGGTGGAAAGAAAGGTCCATTGGGGAATGAACTGCCAAAGCCATCTGCACCCGAAGAGTAGAAAGTTGGAAAAGCAATCAGATTTTATATGACAGCAGGATGTGGCGGGTCTTTGAGCTGAGACAGGCTGTTAAGATTGACCTGGAACTAGATGCCCTTGCTAGAGCATCTTTGGGGCAGATTATTGGAGGTTCCTGGTTAACACAAAGTCACTTTTTTACTGCATGTTGTAGGGAGGTGGGGTGCCACTTTGGATATAGTAACTGTGCTGTGTGAGCATAGTCCAGACGGGGGCCCTCCCTGTGCTTTGGTTTGCCTGCCTTACGGTGGCAAATGGAATGGCATTCTGTCTAAGAATGAGCAGGGCTGCTCCTGGTGACTAGTTACCAGTCAGGACCGGGCAGAGTTCAGCACGAGTCTCCTCTGTACCTCCATAATAGCACATCTGCAAGTGAGCTCCTGGGCTGGCCACGCAGCCGGGTGTATCCTGATGCCAACGTTTGTTTCATTGTAG
Seq C2 exon
CTCTCTGCGGTGTGAGCTTCTCGGACCCCGAGGGATACATTGACTCAAGTGATTTCCCTCCTCAGCCCTCCAGCAGCTTCCTGGAATGCACCTACAATGTGACTGTCTACACTGGCTACGGGGTTGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612:ENSRNOT00000032193:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(39.6=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGGGATCCCCTTCCTC
R:
GAGGGCTGAGGAGGGAAATCA
Band lengths:
351-1580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]