HsaINT0148445 @ hg19
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26688372-26690391:+
Coord C1 exon
chr22:26688372-26689112
Coord A exon
chr22:26689113-26690257
Coord C2 exon
chr22:26690258-26690391
Length
1145 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATTAAAGTCCTTCCTTCCAGCTC
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATGCTCTTCCCGAGGGAGATGCTAGCCCTTTGGGTCCTTACCTCCTGCCCTCAGGAGCCCCGGAGAGAGGCAGTCCTGGCAAAGAGCACCCTGAAGAGAGAGTGGTAACAGCGCCCCCCAGTTCCTCACAGTCGGCGGAAGTGCTGGGCGAGCTGGTGCTGGATGGGACCGCACCCTCTGCACATCACGACATCCCAGCCCTGTCACCGCTGCTTCCAGAGGAGGCCCGCCCCAAGCACGCCTTGCCCCCCAAGAAGAAACTGCCTTCGCTCAAGCAGGTGAACTCTGCCAGGAAGCAGCTGAGGCCCAAGGCCACCTCCGCAGCCACTGTCCAAAGGGCAGGGTCCCAGCCAGCGTCCCAGGGCCTAGATCTCCTCTCCTCCTCCACGGAGAAGCCTGGCCCACCGGGGGACCCGGACCCCATCGTGGCCTCCGAGGAGGCATCAGAAGTGCCCCTTTGGCTGGACCGAAAGGAGAGTGCGGTCCCTACAACACCCGCACCCCTGCAAATCTCCCCCTTCACTTCGCAGCCCTATGTGGCCCACACACTCCCCCAGAGGCCAGAACCCGGGGAGCCTGGGCCTGACATGGCCCAGGAGGCCCCCCAGGAGGACACCAGCCCCATGGCCCTGATGGACAAAGGTGAGAATGAGCTGACTGGGTCAGCCTCAGAGGAGAGCCAGGAGACCACTACCTCCACCATTATCACCACCACGGTCATCACCACCGAGCAGGCACCAG
Seq A exon
GTATGCAGCCCCCAACTCCTGAAGCCATCCTGAAACAGCCATGAGGCACTCACTATGTTCAGGGCATGTGGGTAGAGGAATCTCAAGAAGCCCCGGCCCCACCATCAGTTACCGTCCATTGAGCACTGACTATGAGCTTCGCCCTGTGGCTCAGAATTAATAGCCTCATTTCATTTGTTTGTTGTTTTGGGGGGTTGTTTTAGCAAAGGGGTCTTGATCTTTCGCCCAGGCTGGAGTGCCATGGCACGATCATAGCTCACTGCAGCCTCAAACTCCTGTGCTCAAGTGATCCTCTTGCCTCAGCCTCTTGAGTAGCTGGGACTACAAGCATGCACTATGATGTCCAGCTAATTTTTTTGTTTTTTGTAGAAAGGGGGTCTTGCTTATTGTCCAGGCTGGGGAACTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCAGGACACTCAGCCAACATCCCCATTTTAAAGATGAGACAACTGAAACCCTGAGACCCCCAAGCAACCTGCCAAAGGTCACACAGCTAATGAGCAAGATTCAAAACCTTTTCATCTTGGAACGGAATTCTTCATTTAACCTGCTTCAAAGCCACTAGCCTTTTCAAAGCACATTTGCTTTTAGCATTACATGTATTTTCTAGACTTGATAAAATGCTCTTCTGTGTTCCAGTCTTCTCTACCATCTTTAAAATGGGAGAAGGACCCCCAATTGTCAAGCATACATGGATTTTGGACAAGTGCAATGTGGCCACCCTTCAAAGCACGTGAGCTCTGGGTCCAAATCCTGCTTGCTGTTTGAGCTCGGCCCCTCTCTGAGCTTTTGTTTACTTCCCTCTAAACTGGGGATGAAATATTATCAGTCCCTATGAGAATAAGTGGGGTCACCCCTGTTGACTAGCTAAAATGGTGCCTAGCAGGATATAGTAAGTGATCATTCTGTGTCAATTATTGCTATTTTTATTATCATGTCAATTCTGGAGCTGAGGAATTAACAGCAGAAGGACAGATGGGAACAGCAAAATGCAGGTTCCCCTAAAGCCCCCATTCCACCCCACAGCCCATGGTTGAGCTTACATCCAAGTTGTCTTTGGTGTCCTAATTAAAGTCCTTCCTTCCAG
Seq C2 exon
CTCTCTGCAGTGTGAGCTTCTCCAATCCTGAGGGGTACATTGACTCCAGCGACTACCCACTGCTGCCCCTCAACAACTTTCTGGAGTGCACATACAACGTGACAGTCTACACTGGCTATGGGGTGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-SEZ6L:NM_001184773:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(29.6=6.5)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(68.5=82.2),PF0043115=CUB=PU(39.6=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACTTCGCAGCCCTATG
R:
CCACCCCATAGCCAGTGTAGA
Band lengths:
351-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)