BtaINT0131752 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26630579-26631538:+
Coord C1 exon
chr25:26630579-26630747
Coord A exon
chr25:26630748-26631374
Coord C2 exon
chr25:26631375-26631538
Length
627 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
ACCACCTCTGTTCATCCCAGGCT
3' ss Score
7.26
Exon sequences
Seq C1 exon
CATCCTGTGGGGGCACCATCCACAATGCTACTCTTGGCCGCATCGTGTCCCCTGAGCCCGGGGGAGCTGCAGGGCCCAACCTTACCTGCCGCTGGGTCATTGAAGCAGCCGAGGGACGCCGGCTGCACCTGCACTTCGAGAGAGTCTCGCTGGATGAGGACAATGACCG
Seq A exon
GTGAGGGTCTGAGCCTTGGGTCAGAGGTTCCCCCTTCAAGGAAATAGGAAGGCTACTGCAGGGAGGCAGCAGACTAGGGGCATCCCAGTCGGGATCTATGTTAAATGGAGATCAGTCCTTCCCCTTTCTTAGGCAGTGTAGCTGTGAAAACTGAGACGATCACTTAACCTCTCTGTGCCTCATTTTCTTCATCTGTAGAATGGAGATAATAGTAGCTCCCTCTTAATGTTTCTGTGAGGACAAATGAATTAAAAATAAGTGAAATTCTTGGAGTGACCAGCACACTGTAAGCACTCTAAATGTGTTTACCATCATCATCATTATCCTCAGTCTTTATCTAATAAACTGGTACCCCAGGTCTGTCACTAGCTGCTCTGTGATGCTGGACAGGTTACTTACCCTTTCTGTGCCTCAATTTTCTCATCTATAAAATGAGGGATAATAATAGTATCTGACTTGAGGGTTCTTGTGAGAATTCAATGAGATAAAATGTGTACAGGCTTAGAAGAGTCCATGGCATATAGTTAATATTTGAAAGCAATAGCTATGAAATTAAGTTAGAGCAGGCAAGAGGTGAAGCAGCTTCCTAGGGGAAGCCAAGCTCCTGACCACCTCTGTTCATCCCAG
Seq C2 exon
GCTGATGGTACGCTCAGGGGGCAGTCCCCTCTCACCAGTGATCTATGACTCGGACATGGATGATGTCCCAGAGCGGGGTCTCATCAGTGATGCCCAGTCTCTCTATGTGGAGCTGCTTTCAGAGACACCTGCCAATCCCCTGCTGCTAAGCCTCCGATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955:ENSBTAT00000010460:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(55.7=94.7)
A:
NA
C2:
PF0043115=CUB=PD(43.3=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCATCCACAATGCTACT
R:
TCAAATCGGAGGCTTAGCAGC
Band lengths:
320-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]