GgaINT0006820 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7347306-7348085:+
Coord C1 exon
chr15:7347306-7347471
Coord A exon
chr15:7347472-7347918
Coord C2 exon
chr15:7347919-7348085
Length
447 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCCCGGCTCCCGGCACAGGAT
3' ss Score
7.07
Exon sequences
Seq C1 exon
CGCCCTGCGGAGGCACCGTGCACAACGCCACCATCGGCCGTGTCCTCTCGCCCAGCACCGCGGGCAACCAGTCGGGCAGCATGTACTGCGTGTGGGCCATCACGGCGCCCCCGGGCCAGAAGCTGCACCTGCACTTCGAGAAGCTGCTGCTGGCCGAGAGGGACAG
Seq A exon
GTGAGGGGTTGGTTCCAGTGGCATCTGGCTCGCTCTGGTTGGGGTGGGAGCAAGAGGCAGAGAGAGCGCGGGACAGCGGTTCCTAATGGGGCATCCAAGAGCTCACAAAGGGACACCTCGTGCTGTGCATCCAGGCTATCAGCATCCACATAAGGAAGCACACCTCGTGGTTCTGACACCTGTGTTTAAAAAGCATTGGAATTCAGCCCGGTAACAGGCAGCGAGCCAGCTTTATGGCCCATAGTAAAATCAAAGTGTAAAACTCCAGCTTAAGATACGGGTAAAAGAAACCGATCCGGCTGGCAAATTTTCATTGGCACCATCTCTTCCAATTGCCGGATTTCGGGAGCGCGGAGGGAAGGGCTGGGTGGTCCCACACCTCCCCAGGGCACTGCATCCCCCCCTATCCTCCTCTCTTCGGGGACTGACCCCCGGCTCCCGGCACAG
Seq C2 exon
GATGGTGGTGTACAGCGGGGACAGCAACCGCTCGGCCGTGCTGTACGACTCGCTGCGCGCTGACAGCGTGCCCTTCAAGGGGGTGATCAGCGACGACTCCTCCATCCGCATCGATTTCCTTGCCGAGGAGCCCGCTGCCTCCACTGCCTTCAATATCCGCTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.1=94.6)
A:
NA
C2:
PF0043115=CUB=PD(50.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACAACGCCACCATCG
R:
AGCGGATATTGAAGGCAGTGG
Band lengths:
310-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]