HsaINT0148449 @ hg19
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26701945-26706802:+
Coord C1 exon
chr22:26701945-26702110
Coord A exon
chr22:26702111-26706635
Coord C2 exon
chr22:26706636-26706802
Length
4525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTCTCTGCTCCCACTGCCAGGAT
3' ss Score
9.43
Exon sequences
Seq C1 exon
CTCCTTGTGGAGGGGCAGTGCACAATGCCACCATCGGCCGCGTCCTCTCCCCAAGTTACCCTGAAAACACAAATGGGAGCCAATTCTGCATCTGGACGATTGAAGCTCCAGAGGGCCAGAAGCTGCACCTGCACTTTGAGAGGCTGTTGCTGCATGACAAGGACAG
Seq A exon
GTAAAGCTCTGAAGGTCCACACCCAACCCCGTTTCTTCCCAGAATATTAGAACATGGCTTGAGGACTTGGAGTCTTGAAATGGCTGAAGCTTTGACCCTCGGAATTCAAGAAAAGAAGAGCTGGGGTGGATGGCAAAGATCTTAGACACCATCAGCTTCAATCTCTTCCTTTTACAGATAAGGAAACCAGGGTATGCAGAAGGAAATGGACCTGCCCCAGCTCAATCAGCAGGCTAGGGGAAGAGGCAAAAAGGGAACTGCCCTATTCTTTCTCTTGCACACCCCTTTTTGCAGTTGAACAAAAAGAGAGTATGTATTGATCATCTGCTCAGTACCCAGCCATATATTAGGCTCCATGGAGAACATGAAAGAAGTAGAAAATATTAGTTTCTGACATGATAGGAAATTGAGATGGAAAAACTAGACGTATGCACATGAAAGAATGAAGGAGAAGTTACCAGGCAATATCTAAGCAAGAGTGTGTCTGTAGACTCTTAATAATATGCATAGAATCCAGAATATGCATAGAATCCAGAATTATAAAACTTTAATATTCTGCAGTATTATTCTAGAATATTTGGGGATCTTATTCTAGAAATTATGGAATCTTATTCTAGAATGTTCTGAAATATTCTGGTATCTTATTCTGGGATATTCTGGCGTCTTATTCTAGAATATTATGGGGTCTTGTTCTAGAATATTCTGGATTATTCTGAGATCTTATTCTAAGATAGTCTAGAAAACTAGGACTTTAGCTGCTTTGACTTGCTGTCTTGAGTTGGGTTTCCTTGGAATCAGACATGGTGATAAAGATGTGAGAGGAAGTAGTTCACTGGGGAGCTGATCCTAGTAAGCACTAGGAGGCACATGGGAAAGTGAGATTGTGAATACCAGCTGCGTTAATAAGCGGGTGACTGCTGGGAAAACCGGGATTCTGTCCACTGGAAACCTCTGGGCAATGTGTTGAGCATACCTCAGAGTGGTCCTGTTGGAAGGGTGAGGGAGCTAGGGTACTTATGCACCAGCTCCCATTCATCACTGGATGAGAGATGTGATGAGGAGCACTAACTATCCCCAACATCAGCTGCCACCCTTTGAGCTGGTTGAGTTGACTGATTCTCAGAGACTTGTGGTCAGAAGCCAGCAGAAAATGTGGGAGCAGTTGACTGCTGAGGGGTAGGAGAGGGTAGGGCACTGGCAGTGTTTACTGCACTTCCAGAATGCCCCCACCTTAGAATTTTGGAGTCCAAGAAACTTTGATCTAAGAATTCTAATGTTTTGGCTTCTTTGATGGATCAAACCTAGACTATGAGGTCTTTAGTTTGGAAAGACTTAAAAAAAAAAAAAAGACAACTGAATAATTTTCCCATACCTCTTGAGTCCACTTCCCTCTAGGCAGTTCAGCTTTATCCAGAACAACTCTATATCGATAAATTGCTGCTGTAAAGTGTAAGGTATCAAGCAGGGGCTCCCGAACGTGGCTTTTTAGCAGCACCAGAATAATAACCTGGGGAATTCTTTAAAAATCAGATTCCCTATCCTTTCTTCTGGAGACTCTGAAAATCTGGGCATGGGAACCCTTGGTGAAGGACCATTTCCAAATCTTAAACCTCAGATCTGCCTCTTCTGAGGGGTGCTTGAGATGAGCCAGGCTTAAGTTTATACTAGACAACAAGAATTAGCAGAGACAAAAGAATGCATCAAAATGAGTATTTTCTTATTTTCTGCAAGTTGTTTAAGTCCTGACAAATGGGCCCCCCACTGGCACTGGTCACTAGTAGTTTCTCTGGGGTCCTGCAAAGATCTGCATGAGCTGACACTTACCAGGAAAAAACCAGCTTTCAAGTGTATCAGTAGGAAGAGAAGTTTGTAGAGTTCATCAAGGTTAAAGGTCAACACACACACAAAAATGATGAAGACACTACTCTCTGGGCCAAGAAGAAAAGAGAAATCAATTATGTCTGTCCCATGTACTTTATTGAGGGGGAAATGGCTAAAATACCACAATATGTCAGTTGCAAGAACTCAGAGCTAGATAAGACTCTACATAAGAAATGGGACTTTGACCTAAAGTCAAAATGGAAGGAGATTGGATAATGGATCCAAAAATACAGAGGGAGGGGTATTCCAAGCATGGAGAATTGGAGGATGAGCACAAAGATGGAGGGGAAAGAATTAGCAAATTTGTTGGGGGGCTGCAGCAGAAGCTCTCATGAGAACAGGAGGAAAGAGATCTGGGAAGCTAGATTGGGGTTATATCCTGAAGGATTTTGAATGCCAGGCTACTTTTATAGGCAATAGAGAGCCTATAAAAGTCTTTTTAGTCGAGGAGGGACATGAATAAAGATTTTAAGATGATTTTCCTCAAAATGAACCCTTTCTAAACTCCAGTCTCATAATATGCCCCCAAAAAAGTGAGTTCTCTGGTCAAACATGTTTGGGAGACACTGCGCCCACCCTATCCTTGCCTTGAAAGGTCGTAATATGTACTAGCTAACAAAGGCACTGATAAGTCCTGCAGGGAAAAAAAAGTTTAATTTTTATTTAATTCAGCATTTTGCAAATCCATTTGACCATAGACTATTAAGAATTTGAGAGAAAATGTATTACTATTGCAGACATTCTAGAAAATATGGTTAGAAAATTGTTGGTTTTAAAAGATTAATAGACTACAGAGATTTTGAGATCTTGAAGCTTTCCTCCAGAGCAACCCTCTTTGCCAAAGGCTTCTGTTCTTTGAAAGAGGTGTCCCAACACACAGCCCCTAAGATATAACAGAGTCATCAGGAATCAGAAGACTATGTAGATGCCCCTTCCCACTCCTGGAATGCCCCCTGGACTCTACCACAGCCCCCATCCTTGCCTCAGCCATACTGGACACATGGCAAAATAAACAAACTGTGGCTGCAACATTTATACATCTTAGTGACATTAGAAATTCATCTGGGCAGCATAAAATAAACTATTTTTATGAGTCAGTAAAAACCTCAAAGGCTTAAAAATGTGTGTTTATGACTCCATAAAAGAAGCTTATCTAATTTGTATATGGTTTTCTTCACCATTTTTGCATAATTTCTTTAAAAAACCAAGGCTAGCAAGAAGTCAACTTCAAATAGCTTTAATAACAATAAAAATAAATACCCAACATTTTGTTTAACACATTTTATTTTTCAGGGCACTTTTTATTTTGCAATATTCTCAAAGCCCACCTGTAAGATGGGTCAGAACGACGTTATGGTTGGGTCTCTCCTTTCACAGTTGAGGACACTGAGGCTGAAAGGTGTTTTAAGACTTAATGTAAATCCAGATGGGGAATTGAGAAATGGGAATTATGACTCTTGACTTCCCACACAGTGCTCTTAGAAAATGGGGATCAGAGACAGAGCCTGGTGGGAGTCAAATGCTTAATAAACAAAACTTACCTACCGTGTCCTGTTAACTATTTTTTTTTTAAGACCGAGTCTTGCTCTGTCACCCAAGCTGGAGTGCAGTGGCTCGATCTCGGCTCACTGCAATCTCTGGCTTCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCAGGGACTATAGGCACGCGCCACCATATCTGTCTGATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTACTATCTAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAACTGCTGAGATTATAGACTTGAGCCACCATGCCCCACACTCTGATATAGGTGCAATTGTACCCATTTTACAGATGAGAAAACAGAGGCTCAGAGAAGTGAAGTGTTCTTGTGCAAAGTCACACAGCTGAGAAGTGACAGAGTCAGGACTCACACCCAGGTCTGCCTGACTTTACAAAAGCCACCATTTAGGCAATGAGATTAGTCCATTATTTCCAACTTCTCAGTTAATAATAATAGTCAACATCAATTCATTAGTTCGTCGTTTGGTTTATTACATCATATACATTACTCTCCCTACAACCTCAGAATAAATCCATAAGGAAGCCAGGACAGGCATTTAGTCCCATTGTACAGAAGAGGAAACAGGTTCGATAAGGTGATGCTTGTCTGAGCACATAAGAGGTAAAGTCAGGACTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAGTACAAAAATGTGCTGGGCATGGTGGGACACACCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCACCATTGAACTCCAGGCTGGGCAACAAGAGTGAAACTCTGTCAAAAAAAAAGAGGCAGAGTTAGGTTTGGGATCCGGTAATGAGGCTCCAGAGGCAGTCGTAGCACATCCCTTCCTCTGCCATGTCAGTGACCCAGGAAGATCTGTCAGTGTCCCTCCTCTCTGCTCCCACTGCCAG
Seq C2 exon
GATGACGGTTCACAGCGGGCAGACCAACAAGTCAGCTCTTCTCTACGACTCCCTTCAAACCGAGAGTGTCCCTTTTGAGGGCCTGCTGAGCGAAGGCAACACCATCCGCATCGAGTTCACGTCCGACCAGGCCCGGGCGGCCTCCACCTTCAACATCCGATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-SEZ6L:NM_001184773:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.1=94.6)
A:
NA
C2:
PF0043115=CUB=PD(50.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)