HsaINT0148449 @ hg38
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr22:26305979-26310836:+
Coord C1 exon
chr22:26305979-26306144
Coord A exon
chr22:26306145-26310669
Coord C2 exon
chr22:26310670-26310836
Length
4525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTCTCTGCTCCCACTGCCAGGAT
3' ss Score
9.43
Exon sequences
Seq C1 exon
CTCCTTGTGGAGGGGCAGTGCACAATGCCACCATCGGCCGCGTCCTCTCCCCAAGTTACCCTGAAAACACAAATGGGAGCCAATTCTGCATCTGGACGATTGAAGCTCCAGAGGGCCAGAAGCTGCACCTGCACTTTGAGAGGCTGTTGCTGCATGACAAGGACAG
Seq A exon
GTAAAGCTCTGAAGGTCCACACCCAACCCCGTTTCTTCCCAGAATATTAGAACATGGCTTGAGGACTTGGAGTCTTGAAATGGCTGAAGCTTTGACCCTCGGAATTCAAGAAAAGAAGAGCTGGGGTGGATGGCAAAGATCTTAGACACCATCAGCTTCAATCTCTTCCTTTTACAGATAAGGAAACCAGGGTATGCAGAAGGAAATGGACCTGCCCCAGCTCAATCAGCAGGCTAGGGGAAGAGGCAAAAAGGGAACTGCCCTATTCTTTCTCTTGCACACCCCTTTTTGCAGTTGAACAAAAAGAGAGTATGTATTGATCATCTGCTCAGTACCCAGCCATATATTAGGCTCCATGGAGAACATGAAAGAAGTAGAAAATATTAGTTTCTGACATGATAGGAAATTGAGATGGAAAAACTAGACGTATGCACATGAAAGAATGAAGGAGAAGTTACCAGGCAATATCTAAGCAAGAGTGTGTCTGTAGACTCTTAATAATATGCATAGAATCCAGAATATGCATAGAATCCAGAATTATAAAACTTTAATATTCTGCAGTATTATTCTAGAATATTTGGGGATCTTATTCTAGAAATTATGGAATCTTATTCTAGAATGTTCTGAAATATTCTGGTATCTTATTCTGGGATATTCTGGCGTCTTATTCTAGAATATTATGGGGTCTTGTTCTAGAATATTCTGGATTATTCTGAGATCTTATTCTAAGATAGTCTAGAAAACTAGGACTTTAGCTGCTTTGACTTGCTGTCTTGAGTTGGGTTTCCTTGGAATCAGACATGGTGATAAAGATGTGAGAGGAAGTAGTTCACTGGGGAGCTGATCCTAGTAAGCACTAGGAGGCACATGGGAAAGTGAGATTGTGAATACCAGCTGCGTTAATAAGCGGGTGACTGCTGGGAAAACCGGGATTCTGTCCACTGGAAACCTCTGGGCAATGTGTTGAGCATACCTCAGAGTGGTCCTGTTGGAAGGGTGAGGGAGCTAGGGTACTTATGCACCAGCTCCCATTCATCACTGGATGAGAGATGTGATGAGGAGCACTAACTATCCCCAACATCAGCTGCCACCCTTTGAGCTGGTTGAGTTGACTGATTCTCAGAGACTTGTGGTCAGAAGCCAGCAGAAAATGTGGGAGCAGTTGACTGCTGAGGGGTAGGAGAGGGTAGGGCACTGGCAGTGTTTACTGCACTTCCAGAATGCCCCCACCTTAGAATTTTGGAGTCCAAGAAACTTTGATCTAAGAATTCTAATGTTTTGGCTTCTTTGATGGATCAAACCTAGACTATGAGGTCTTTAGTTTGGAAAGACTTAAAAAAAAAAAAAAGACAACTGAATAATTTTCCCATACCTCTTGAGTCCACTTCCCTCTAGGCAGTTCAGCTTTATCCAGAACAACTCTATATCGATAAATTGCTGCTGTAAAGTGTAAGGTATCAAGCAGGGGCTCCCGAACGTGGCTTTTTAGCAGCACCAGAATAATAACCTGGGGAATTCTTTAAAAATCAGATTCCCTATCCTTTCTTCTGGAGACTCTGAAAATCTGGGCATGGGAACCCTTGGTGAAGGACCATTTCCAAATCTTAAACCTCAGATCTGCCTCTTCTGAGGGGTGCTTGAGATGAGCCAGGCTTAAGTTTATACTAGACAACAAGAATTAGCAGAGACAAAAGAATGCATCAAAATGAGTATTTTCTTATTTTCTGCAAGTTGTTTAAGTCCTGACAAATGGGCCCCCCACTGGCACTGGTCACTAGTAGTTTCTCTGGGGTCCTGCAAAGATCTGCATGAGCTGACACTTACCAGGAAAAAACCAGCTTTCAAGTGTATCAGTAGGAAGAGAAGTTTGTAGAGTTCATCAAGGTTAAAGGTCAACACACACACAAAAATGATGAAGACACTACTCTCTGGGCCAAGAAGAAAAGAGAAATCAATTATGTCTGTCCCATGTACTTTATTGAGGGGGAAATGGCTAAAATACCACAATATGTCAGTTGCAAGAACTCAGAGCTAGATAAGACTCTACATAAGAAATGGGACTTTGACCTAAAGTCAAAATGGAAGGAGATTGGATAATGGATCCAAAAATACAGAGGGAGGGGTATTCCAAGCATGGAGAATTGGAGGATGAGCACAAAGATGGAGGGGAAAGAATTAGCAAATTTGTTGGGGGGCTGCAGCAGAAGCTCTCATGAGAACAGGAGGAAAGAGATCTGGGAAGCTAGATTGGGGTTATATCCTGAAGGATTTTGAATGCCAGGCTACTTTTATAGGCAATAGAGAGCCTATAAAAGTCTTTTTAGTCGAGGAGGGACATGAATAAAGATTTTAAGATGATTTTCCTCAAAATGAACCCTTTCTAAACTCCAGTCTCATAATATGCCCCCAAAAAAGTGAGTTCTCTGGTCAAACATGTTTGGGAGACACTGCGCCCACCCTATCCTTGCCTTGAAAGGTCGTAATATGTACTAGCTAACAAAGGCACTGATAAGTCCTGCAGGGAAAAAAAAGTTTAATTTTTATTTAATTCAGCATTTTGCAAATCCATTTGACCATAGACTATTAAGAATTTGAGAGAAAATGTATTACTATTGCAGACATTCTAGAAAATATGGTTAGAAAATTGTTGGTTTTAAAAGATTAATAGACTACAGAGATTTTGAGATCTTGAAGCTTTCCTCCAGAGCAACCCTCTTTGCCAAAGGCTTCTGTTCTTTGAAAGAGGTGTCCCAACACACAGCCCCTAAGATATAACAGAGTCATCAGGAATCAGAAGACTATGTAGATGCCCCTTCCCACTCCTGGAATGCCCCCTGGACTCTACCACAGCCCCCATCCTTGCCTCAGCCATACTGGACACATGGCAAAATAAACAAACTGTGGCTGCAACATTTATACATCTTAGTGACATTAGAAATTCATCTGGGCAGCATAAAATAAACTATTTTTATGAGTCAGTAAAAACCTCAAAGGCTTAAAAATGTGTGTTTATGACTCCATAAAAGAAGCTTATCTAATTTGTATATGGTTTTCTTCACCATTTTTGCATAATTTCTTTAAAAAACCAAGGCTAGCAAGAAGTCAACTTCAAATAGCTTTAATAACAATAAAAATAAATACCCAACATTTTGTTTAACACATTTTATTTTTCAGGGCACTTTTTATTTTGCAATATTCTCAAAGCCCACCTGTAAGATGGGTCAGAACGACGTTATGGTTGGGTCTCTCCTTTCACAGTTGAGGACACTGAGGCTGAAAGGTGTTTTAAGACTTAATGTAAATCCAGATGGGGAATTGAGAAATGGGAATTATGACTCTTGACTTCCCACACAGTGCTCTTAGAAAATGGGGATCAGAGACAGAGCCTGGTGGGAGTCAAATGCTTAATAAACAAAACTTACCTACCGTGTCCTGTTAACTATTTTTTTTTTAAGACCGAGTCTTGCTCTGTCACCCAAGCTGGAGTGCAGTGGCTCGATCTCGGCTCACTGCAATCTCTGGCTTCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCAGGGACTATAGGCACGCGCCACCATATCTGTCTGATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTACTATCTAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAACTGCTGAGATTATAGACTTGAGCCACCATGCCCCACACTCTGATATAGGTGCAATTGTACCCATTTTACAGATGAGAAAACAGAGGCTCAGAGAAGTGAAGTGTTCTTGTGCAAAGTCACACAGCTGAGAAGTGACAGAGTCAGGACTCACACCCAGGTCTGCCTGACTTTACAAAAGCCACCATTTAGGCAATGAGATTAGTCCATTATTTCCAACTTCTCAGTTAATAATAATAGTCAACATCAATTCATTAGTTCGTCGTTTGGTTTATTACATCATATACATTACTCTCCCTACAACCTCAGAATAAATCCATAAGGAAGCCAGGACAGGCATTTAGTCCCATTGTACAGAAGAGGAAACAGGTTCGATAAGGTGATGCTTGTCTGAGCACATAAGAGGTAAAGTCAGGACTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAGTACAAAAATGTGCTGGGCATGGTGGGACACACCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCACCATTGAACTCCAGGCTGGGCAACAAGAGTGAAACTCTGTCAAAAAAAAAGAGGCAGAGTTAGGTTTGGGATCCGGTAATGAGGCTCCAGAGGCAGTCGTAGCACATCCCTTCCTCTGCCATGTCAGTGACCCAGGAAGATCTGTCAGTGTCCCTCCTCTCTGCTCCCACTGCCAG
Seq C2 exon
GATGACGGTTCACAGCGGGCAGACCAACAAGTCAGCTCTTCTCTACGACTCCCTTCAAACCGAGAGTGTCCCTTTTGAGGGCCTGCTGAGCGAAGGCAACACCATCCGCATCGAGTTCACGTCCGACCAGGCCCGGGCGGCCTCCACCTTCAACATCCGATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095:ENST00000404234:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.1=94.6)
A:
NA
C2:
PF0043115=CUB=PD(50.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains