RnoINT0133934 @ rn6
Intron Retention
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50197281-50199165:+
Coord C1 exon
chr12:50197281-50197446
Coord A exon
chr12:50197447-50198998
Coord C2 exon
chr12:50198999-50199165
Length
1552 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGCCTTTCCTCTACCTAGGAT
3' ss Score
10.74
Exon sequences
Seq C1 exon
CCCCGTGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTGTCCCCCAGTTACCCGGGAAACACCAATGGCAGCCAGCTCTGTGTGTGGACCATCGAGGCTCCAGAGGGCCAGAAGCTTCACTTGCATCTTGAAAGGCTACTGCTGCATGAGAAAGACAG
Seq A exon
GTGAGCTGACTGCACCAACTGCTCCTCCTCAGCATAGAGAGGGTGGAGTGGGTAATCTGGGTGTGGCTGAAGCCCTGGGGAAGTTGATAAAGATCTTATGGCCCTCTGCTTCTGGTCAGTATATTGAGGCACTCTGTGGGAAAGGAGCCTTCCTGAGCCACCTAGGAAGAGAGGGAAGAAGGAGATGGGAAACATACACAAACATACACACCCTCACACATGCCCACACACAGGTACACATGCATTCGCACACACCTGCATGCACACATTCATGGGTGCACACATAGCCCATACATCCACACACAGAGACATGCACACATCCACACATGCATGCATACATACATGCATGCATACACACATACAGACACAATGCACACACACATGCACACATGTACACACTCATACCCTGAATGCACATATTCATGTTTGCACACACCTCCATACATCCACATACCCAGCAATGCATGCACACACATGCATGAACATACACATACAGGCACACATGCATATGCACACACATGCACCCTGCATCACACATTCATGCGTGCACACACACCTCCACACATCCACATACCCAGGGATGCACACACACACACACACACACACACACCTGCATGCACATATTCATGCATGCATGCACACACATGCCTGCATACATACTTACAGACACACATGCACATGCACATACATACACACAGGCATGCATGCATACACCTGCAGGCACACATTCATGCCTGCACACACACACACACACAAACACACACACACACACGCGTGCATGCATGCACACATACATGCCCACATACGCACATATAGGCCCACATGCACATGCACAAACATGCACACACATGCACACACATGCACGCACACACACACACCTGCAGGCACACATTCATGCCTGCACCTCCACATACCCACACACCCACACATCCACCCAAGCATGCATGCACACACACATGCACACATACACACATACAGGCACACACGCACATGCACTCACATGTATGTGCACTCACATGCATGAACACACACACACACACACACATACTGCCTGTGACTTGCTCTCAGGCATCTCTTCCCTGAGTGGAATGAGAAGGTGCATATATTGAGCACCCCTCTGCACAAAGCCATGATTAGGCTCCATGGAGAACAATTACGATACACACAGCACTGTCCTGGGAAGACAGGAGGCAGGGATGGAGAAACTCCCCTGGAAAGAATTAGGCAGGCTGGGTGGCAGACCTCTTCCTGCATCGTGGGACACTGCCTAACTGCACATTGCTGTCCAAGCCCCACCTCTCAGCGCAGAGCCACCCATGACACGGTAACTACTCCTGGTGCCCCTTACTCACCACAACCCACCCTGCACCCCGAGAGACTCAGAACAAGCAGGCGGTTTCCATTTCTGTGAGGGATGAGGAAGACCGAAGGGGCAGGATTTGAGTTCAGAGGGAGATCCCGGTGAGCATCCCACACACACCCTCTCCACTCTGGCCCGGTGTCACCGACCCAGAAAGACATGTCAGTATCCCTCTGCCTTTCCTCTACCTAG
Seq C2 exon
GATGGTTGTCTACAGTGGACGGACAAACACGTCAGCCCTCTTGTACGACTCACTCCGAACAGAGAGCGTGCCCTTCGAGGGCCTGCTGAGCGAGGGTAGCAATATCCGCATCGAGTTCACCTCTGACCAGGGCCAGGCAGCCTCCGCCTTCAACATTCGCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612:ENSRNOT00000032193:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.1=94.6)
A:
NA
C2:
PF0043115=CUB=PD(50.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGCAGTGCACAATG
R:
CTCAAAGCGAATGTTGAAGGCG
Band lengths:
326-1878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]