MmuINT0142292 @ mm10
Intron Retention
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112464573-112466111:-
Coord C1 exon
chr5:112465946-112466111
Coord A exon
chr5:112464740-112465945
Coord C2 exon
chr5:112464573-112464739
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGCCCTTTCTCTGCCCAGGAT
3' ss Score
10.32
Exon sequences
Seq C1 exon
CCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCATGAGAAAGACAG
Seq A exon
GTGAGCTGTCCACACCGACTGCCTCTCCCCAGCTTAGAGAGGGTGGGGTGGGTGATCGGGGTGTGGCTGAACCCCAGCGGAAAAAAAGCCCTGGGGAGGTTGGCCCTCTGCTTCCAGCCAGGAGTCTGAAGCACTCAGTGGGAAAGGAGCCTTCCTGAGCCACCTAGGACACGAGGGAAGAAGGGGATGGGAAACACACACACACACTGATGCATGCTTACACATGCACAAACGTGCCTGTGCACACATGCACACAGGCACACACATACCTGCATGCACACATTCACATGTGCACACACCCACACATCCACACACCCAGGCATGCATGCACACACACACATGCACACAACATGCATGCATCCATTGCATGCATGCACATACTCATACATGCACACACAGGCACACATGCATGTGCACACATGCACACAGGCATACACACATTCATGAGTGCACCCACACATACCCACACATCCATACACCTAGACATGTATACGCACACACACACACGTACATGCACCCATTGCATGCATGCACACACTCATACATGCACACACAGTCACACCTGCATGTGCATACATGCACACAGGCACACACTCATTCATGCACAGATTCATGAGTGCACCCACACATCCACACACCTAGATATGCATGCACACACACACTTGCATGCGCACACTCATGCATTATGCACACACAGGCACACATGCACACACATGCATGTGCATACACACACAGACACACGCTGCCTAGGCCTTCCTCTCAGGCATCTCTCTCCTGAGAGGAATAAGAATGTACATCTATTAAGCACCCCCTCTCTGCACAAAACCATGATTAGGCTCCGTGGAGAACAAGTGTGGTACACACAGCATGAGCTCCCAGAGAGACAGGAGGCAGGTATGGAGAAAGTCAACTGGAAAGAGTTAGGCAGGCTGAGTGGCAGACCTCATCCTGCATAGTGTGACACTGCTTGACTGCGCATTGCTGGCCAATGCCCACCTCTCACTGGCCACAACCCACCCTGCACCCTGAGGGACTCAGAACAAGCAGACAGTTTCCATTTCTGTGACGGATGAGGAAGATGGAAGAGGCAGGATTTGGGTTCCGAGGGAGACCCGGGTGAGCATCACACACACCCCTCTCCACTCTGGCCCATTATCACTGACCCTGCAAGACATGTCAGCATCCCTCTGCCCTTTCTCTGCCCAG
Seq C2 exon
GATGATTGTCTACAGTGGAAGAACAAACACATCTGCCCTCCTGTACGACTCTCTCAGAACAGAGAGCGTGCCCTTCGAAGGCCTGCTGAGCGAGGGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153:ENSMUST00000075387:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.1=94.6)
A:
NA
C2:
PF0043115=CUB=PD(50.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGCAGTGCACAATG
R:
CTCAAAGCGGATGTTGAAGGC
Band lengths:
326-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types