RnoINT0133952 @ rn6
Intron Retention
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198392053-198392941:+
Coord C1 exon
chr1:198392053-198392221
Coord A exon
chr1:198392222-198392777
Coord C2 exon
chr1:198392778-198392941
Length
556 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CACCCTTCTGTCCATCCCAGGCT
3' ss Score
8.91
Exon sequences
Seq C1 exon
CATCTTGTGGTGGTACCATCCACAATGCCACACTGGGTCGCATTGTGTCCCCTGAGCCTGGGGGAGCTGCAGGGCCCAACCTCACCTGTCGCTGGGTCATCGAAGCAGCTGAGGGACGGCGGCTACACCTGCACTTTGAGAGAGTCTCACTGGATGAGGACAATGACCG
Seq A exon
GTGAGGATCCGGACTCTGGGTCAGAGATCTCTACCTTGGGAAGGCTGGGAGGCTTCAGGGGGAGAGTCAGATACACTGGATGAAGTGTCAAACCGAGTTTTGTCGTAACCTTCTCAGAGAGTTCAGTCATGCAACCTTAGGTGCATCAGAATGCCTGGAGGCACCTCAGTTCTCATGGGTAGAACAGAGACGATTGCGCCCTTCCAAATGCTTAATTAATGAACGCATTAAGATATGTAAAGTGGTTGAAGTGGTGCCTAGGACATGGTAAGCACCATCAACATACACGCTGTCATTTTCCTCACCGCTCTCTGTTGCTTCCTAAGTGTGCTCTCAGGCTGAGCACCCAGGCTCTCTGTGTCTCTGTATCCTTACCTATAAAATGAGGGCTTAATAATAGTGTCTGACTCAAGAGTCCCTGCAAAGATCAAACAAGATCAAATACGTAGAGGCATGGTAAGGGTTTGATAATAGCAGCCGTAAAGATAAGCAGGAGAGCAGGCGGGGAGGCACCTCCAAGGGGAAAATGCACCTGCCACCCTTCTGTCCATCCCAG
Seq C2 exon
GCTGATGGTGCGCTCAGGGGGAAGCCCCCTGTCCCCTGTGATTTATGACTCTGACATGGATGATGTCCCCGAGCGTGGCCTCATCAGTGACGCCCAGTCCCTCTACGTAGAACTGCTTTCAGAGACGCCAGCCAACCCCCTGCTGCTCAGCCTCCGGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098:ENSRNOT00000037405:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.2=94.7)
A:
NA
C2:
PF0043115=CUB=PD(42.7=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCCACAATGCCACACTG
R:
CTGAGCAGCAGGGGGTTG
Band lengths:
305-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]