GgaINT1024905 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5914201-5914927:-
Coord C1 exon
chr19:5914759-5914927
Coord A exon
chr19:5914368-5914758
Coord C2 exon
chr19:5914201-5914367
Length
391 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
AGCCTGCTGCACCTGGGCAGGCT
3' ss Score
3.29
Exon sequences
Seq C1 exon
CGGCGTGCGGTGGGGCCATCCGTAATGCCACAGTGGGACGTGTCGTCTCCCCGGGCTTCCCTGGGAACTACAGCAACAACCTGACCTGCCACTGGCTGCTGGAGGCTCCCGTCGGCCACCGCCTGCACCTCCACTTCGAGAAGGTTTCACTGGCAGAGGACGATGACAG
Seq A exon
GTTTGGGTCCATGGAGCACGGGAATGGGGGAGTGGGGGCACCCTGGGACAGCTCTGCACCATGTATGGGGATGGAACGTGTTAGGTATGTTCAAGGGTGGGTGCTGTTGGCCACACTCAAGAATGGGTACTCTTGTCTGTGCCTGGCGAGGGGGAGCATTGGCCATGCCCAAGGATGGGTGCTGTTGGCCATCGCTGGGACCACGTGCGGTTGGCAGTGCTGACTGATGACGTGGCCCAATGGTGGGCACAGTTGGCCATGTCCAAAAGTGTCACTTGCCATAAATGAGGACGGGCACTCTGGCCATGCCTCGGGATGGGTGTCACTGGCCGTGCACACGGTTGGTTGCTGTTGGCCATGGCAGAACCCTGAGCCTGCTGCACCTGGGCAG
Seq C2 exon
GCTCATCATCCGCAACGGGAACAACGTGGAGGCACCTCCAGTATACGACTCCTATGAGGTGGAGTACCTGCCCATCGAAGGGCTGCTCAGCACTGGACGCCACTTCTTCGTGGAGCTCACCACCGACAGCAGCGGGGCCGCTGCGGGCATGGCACTGCGCTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.5=94.7)
A:
NA
C2:
PF0043115=CUB=PD(49.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGCCATCCGTAATG
R:
GCTGCTGTCGGTGGTGAG
Band lengths:
294-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]