RnoINT0133918 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64871804-64872215:-
Coord C1 exon
chr10:64872047-64872215
Coord A exon
chr10:64871971-64872046
Coord C2 exon
chr10:64871804-64871970
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGCCTGTCTCCTGACCCAGGCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
CTGCTTGTGGAGGAGTGATTCGGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCTTTCCCGGGAACTACAGCAACAACCTCACCTGCCACTGGCTGCTAGAAGCCCCCGAGAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTCCCTGGCAGAAGATGACGACAG
Seq A exon
GTGAGGGCTGTCCCGCCTGGGTGGGCGTATCTGTCCAGAGCATACCCACCACATAGCTGCCTGTCTCCTGACCCAG
Seq C2 exon
GCTCATCATCCGTAACGGGAATAACGTGGAGGCCCCGCCAGTGTATGACTCCTATGAGGTGGAGTACCTGCCCATTGAGGGCCTGCTCAGTTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGCGGGGCAGCCGCAGGCATGGCACTGCGCTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.5=94.7)
A:
NA
C2:
PF0043115=CUB=PD(49.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGGTCTCCCTGGCAGA
R:
CCGCTGCTGTCAGTACTGAAC
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]