MmuINT0142276 @ mm9
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77786350-77786762:+
Coord C1 exon
chr11:77786350-77786518
Coord A exon
chr11:77786519-77786595
Coord C2 exon
chr11:77786596-77786762
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGCCTCTCTTCTGGTCCAGGCT
3' ss Score
9.28
Exon sequences
Seq C1 exon
CTGCTTGTGGTGGAGTGATTCGGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCAACAACCTCACCTGCCACTGGTTGCTAGAGGCTCCAGAGAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTCCCTGGCAGAAGACGACGACAG
Seq A exon
GTGAGGAGCTGTCCTGCCTGGACGGGGCAACCTGTTGGGAGGATAGCAACCACAGAGCTGCCTCTCTTCTGGTCCAG
Seq C2 exon
GCTCATCATCCGCAATGGAAATAACGTGGAGGCCCCGCCGGTGTACGACTCCTATGAGGTGGAATACCTGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-Sez6:NM_021286:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(49.5=94.7)
A:
NA
C2:
PF0043115=CUB=PD(49.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTAGAGGCTCCAGAGA
R:
AGAAGTGTCTGCCAGAGCTGA
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: