BtaINT0132527 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6666687-6667065:+
Coord C1 exon
chr17:6666687-6666755
Coord A exon
chr17:6666756-6666924
Coord C2 exon
chr17:6666925-6667065
Length
169 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AGTGGTATTGTACCTTACAGCGT
3' ss Score
6
Exon sequences
Seq C1 exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGATGTCATCCCGCAAAACCCTGGAGAACTTTCTTGTAAG
Seq A exon
GTAAAGTAGAGCTCCTTCTTTACTGACAAGTTTTTTAAAAAATTTGCTGGCCTCTGTTACTGTTTTACACATTATTAAATGCTTTAGGCTCCAAAGATTAAAATGTGGAAAAAGTAATAATGTTTTATTAAATAATAATTGCTTCAGAGAGTGGTATTGTACCTTACAG
Seq C2 exon
CGTGGGGACGTCCTGGTGATACTGAAGCAGGCAGAAGGTAATTACTTGGAGTGCCGGAAGGGAGACGATGCCGGCAGAGTTCACCTGTCTCAGATGAAGATCATCACGCCGCTTGATGAACATCTTAGCAGCAGACCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(33.3=78.3)
A:
NA
C2:
PF0765312=SH3_2=PD(63.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGTGCCTCATGGAATTG
R:
ATTTGGTCTGCTGCTAAGATGT
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development