GgaINT0073742 @ galGal4
Intron Retention
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32698319-32698646:-
Coord C1 exon
chr4:32698560-32698646
Coord A exon
chr4:32698361-32698559
Coord C2 exon
chr4:32698319-32698360
Length
199 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGTT
5' ss Score
-2.47
3' ss Seq
TATGGCACCAGGTCATTCTGCTT
3' ss Score
-13.04
Exon sequences
Seq C1 exon
CTGTCCGCGCCTCATGGAGTTGCCAAGGAAAACTGCCTTCCCAGAAACCATGGAGAACTGTCTCGTAAGGTAGGACACTTTCTTCTG
Seq A exon
GTGGTTAATGTTTCATGAGTAAGTGTCCTGAGCATGGCCCCTGTTATGTTAAAATATCACATGCTTTGGGCTTTAAAAGTTACTCTGAGAAATCCAATGGTGGTTTATTAAATCCTTGTGTTTTCTTTAATAAAAACAAAGCAACGGCCAAAACAGAATCCAATAATGTTGATTTGCCTTATGGCACCAGGTCATTCTG
Seq C2 exon
CTTATGGAGCAGAGCAGCAGTAATTACTTGGAGTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGCCTCATGGAGTTG
R:
CTGGCACTCCAAGTAATTACTGCT
Band lengths:
122-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]