RnoINT0134668 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185413960-185414364:+
Coord C1 exon
chr2:185413960-185414028
Coord A exon
chr2:185414029-185414223
Coord C2 exon
chr2:185414224-185414364
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CGTGCTGTTGTGCTTTGCAGCGT
3' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTCGGTGCCTCATGGAATTGCCAATGAAGACATTGTCTCCCAAAACCCCACGGAACTCTCCTGTAAG
Seq A exon
GTAAAGTCGAGCTCTTTCTTTACTGACTGATTAAAAGAGAAAAAAGAAGAAGAAGAAAAAAAAAAAAAAGCGCTGCCCTCTGTTCCTGCTATTACATATTATTAAATGCTTTAGGCTCCAAAGATTAAAATGTGGGGAAGTAGTAATATTTTATTAAGTAATAATTGCTTCAGAGCGTGCTGTTGTGCTTTGCAG
Seq C2 exon
CGTGGAGATGTACTTGTGATCCTGAAACAGGCAGAGAACAATTACCTGGAGTGCCGGCGGGGAGAAGGCACCGGCAGAGTCCACCCGTCCCAGATGAAGATTGTCACTCCCCTGGACGAGCACCCCAGAAGCAGACCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=NA C2=0.617
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(33.3=78.3)
A:
NA
C2:
PF0765312=SH3_2=PD(63.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGTGCCTCATGGAATT
R:
GTTAGGTCTGCTTCTGGGGTG
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]