BtaINT0132530 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6671680-6674030:+
Coord C1 exon
chr17:6671680-6671810
Coord A exon
chr17:6671811-6673974
Coord C2 exon
chr17:6673975-6674030
Length
2164 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTGATTTTTGTCTTTACTAGATT
3' ss Score
9.09
Exon sequences
Seq C1 exon
AACAAGCTGATGATCTGAGCCTCACTTCTGGAGAGATTGTTTATCTTCTGGAAAAAATAGATACAGATTGGTACAGAGGGAAATGTAGAAACCAGACTGGTGTATTTCCGGCCAACTACGTCAAAGTGATT
Seq A exon
GTAAGTAGATCGTGCATGTTGAAATTGGTCACATATTCAGTGGAGTCTATGTAATTCACAGTTTGAAAAAAATAACCAGATGCCTAGATTCTTGGCTTCTGGTTCTGTCTCTTCCATTAATTCGTTTAGTATTTGAAAAATTCAGAAATAAAGGTTTGTTCAACTAGGTAGTAGTTAATTATTAATATATTATGGAGCATTAGAACTTAATGCTTAAATGCTATCTGAAATCCTAAGGTAAAAAGCTACTGCAGGTCCACTGGTGAATCAGCTATTCTTGGAGGGTTGATAAGCACATGAGGGTATATGTTAATTCTCTGAAACATTCAGCAAACAAGAATTAACGATACTGGATTGTCGTATAGGAATGTTTGTTCTCCAAGGTTATGGTACCACTTCTCTTTTTCTTTGGAGTGCATTTCATTATTGATTTCTTTCATTCTTTCCATCCCCATTCATTTCCGTCTTAAAAAAAAAAATATATATATATATATATATATGAGATTTCCCTGATGGTCCAGTGGTTAAGAATCCACCTTGCAGTGCAGGGAACAGAGGTTCAATCCTTGGTCTGGAAAGATCTCACATGCCTTGGGGCAGCTAAGCCAGTGCACCGAACTACCAAGGCCAAGCTCGAGAGCCTATGTGCCCCAACTGCTGCAGCCCACGTGCTGGAGCCGGTGCTCCACAGCAGGAGAAGCCAGCACAGTGAGGAGTCCGTGCACTGCAGCTGGAGAGTAGCTCCCACTCACTGCAGCTAGAGAGAGCCCACACAGCACAAAGACCCAGTACAGCCATAAACAAATAGATTAAAAGATTCTTCTTTAAAAAAAAAAATAGATTTGGCAGTACTAAAGTACTTTCATTGGAGGGAATGGTTTTTCACTTAATAGTTTCAAATCTGACTGAGAAACATTATATTAAAGTGTCATAATTTTACACACCCTCACAGCCTACCTGGTGAAAGCAGACCCCTGTGGTAGAGCCCTGAGTGTTAAGCCCGGGTGGCTGAGAAACACAGAGATGAACTAAGACTGCCACGCGAGCATTTACATCAGTGGGAAGAGAATGACTCACTTGCTGATATAACTTACTGATACTGAAAAATATCAATAAAGCTAGCTTAAATAGTTGAACATGAGCCGCTTATTTGAGGCGGGGAAGCAAATGATTTTCCATCAGAAACTTAGCAAACAGACATAACAGATAACCTATGTTTTTCAAGTATAAATGAGATTGAGTCTCTTGAATTACAAAATGTGGGTCTTCCAAGTAGTCTGATGTAGTAGTAGTCTGGAGAAACCCAACCACATTCTCTACATTAACATTAAGAATAATGTTGGTTTTAGCGCTCTTCCCCATTTTTCTTCTGCCCAGTGTGGCAGTGCTTGAAAAAGCACAGTTACCACACTGAAATCAGTCACACTGCAGTTGCCACATTATTGGTGTGTTATTTCTAAGCCTGCAAGTTTAAAAAATTGTTTTAAAACTTCAAACTTTTGGAATTCATCAAGAAGGACACTTCTTTATTTAATGTAAATCTCAAAGCTTTAAGTAGTTTTCCGACTTAGTGCATTATGGTCAAATATTTCATCACAACTTAGCTCTACTGAGCCTTGTAGATGAGGTATTATATAACGTGCTCACCCCTAGATGCTCCCTGAGTGCTAAGTCCTCTCTTCCTTCCCTACTTACAGTGAAGGGGAAAAAATGGCCCAGAGTTATGAAAAGGGAGAGCTTCACAAGTTTGATTAAAAGGTTTTATTTGGGGTCATGGAAGTATTGCAGAGTTCTACCAACACTTTGGCTAGGCGTCTAGATAGTACCTATGCCTAGTTTCTGTGCTAAGCCCTCCTCACCTGATGTTTTCAACTTAGGGGATGTGAGATAGAGAGCCCCAGTTAGGGGGGAATGACATAATGTGCTTATTCCAGCAAATAAGAGGAAGATGGGTTGTCTATGCAAGGAGGGCCACATCACAAGTTATGGAGTTTTTTCAAAACCCAAATTCTGGATTTCATACCTTTTTAGCATCTATGGTGTGTTTTGTCGATTTAATACCTAGCTAAACTGGTTAACCTCAGCTGTAAATTTCCTAATTACTTAGCCTTAAATTTATCTTATGAAATAATACAATTGTTGCCTTGATTTTTGTCTTTACTAG
Seq C2 exon
ATTGATGTTCCAGGAGGAAATGGGAAACGGGAATCCATCTCATCTCATTGTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813:ENSBTAT00000022368:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(80.4=84.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development