DreINT0134337 @ danRer10
Intron Retention
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23707824-23710451:-
Coord C1 exon
chr1:23710321-23710451
Coord A exon
chr1:23707895-23710320
Coord C2 exon
chr1:23707824-23707894
Length
2426 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCAAATATTTTCTTTTCCAGAGC
3' ss Score
8.7
Exon sequences
Seq C1 exon
CGGGGCCAGGAGAGCTGGCTTTAAAAGCCGGTGATGTGGTGTCTAATGTAGAACAGCTCGACGATGATTGGTACATGGGAACATGCAGAAATGCCACTGGATTCTTCCCCATTAACTATGTTAAGGTTCTG
Seq A exon
GTAAGTGAATTTTTCTCAAAAACCACAGGAGATGCCCCATTACATTTTGTTAATGTTGTTGTTGTGAGAATTATTTAGTATGTTTAATTCCTTTCAAATTGAATCAATTAACATCAAATATTTTAATCTAGCTCTTAAATAGGTGGTTATTGTCTTCTAAATTTCACAAATGCATCTACTGGCAAATTGTAGTGCAATAATATGTTAATAATTATACTGCTCAGATTTTACAAATAGTGTTGTGTTGACAGCATTCACAAGGTCATATATTTAACCCTTTCACCTAAGACTTAATAAAAAAGTAAACAAATATCTTTGTTTTATCAATTCAGCAAATCTGTGAACCAACACTTTGTTTTAAAATGGCTAGCTCCTATCGAGAGATACCTTCTATTAGACAAGCCTTTATTAAGGATATTGAGCAACACAACAAGTGCTGATTCAGCATTCTTAAGGGTCCCATAAAGTGCTTTAAAATATGCATTTTTATTGGATGTTTGATGTAATCTCAACTGAAACATGAAGAGAGGGTGGGATAAAGAGTTGGGCATAGTTTTTCTTTTATTATTTTAGCAAATAGGACAGTAAAAGAATATTTTTTTACAATGTGAAAAATGTGAAAAGGATCTATTAATGAAAACTGTGACGCACTCATAACTGTGACTCTGACAAAATCCAACAAAATGTGTCTGTAGCCGTCTGTCTGCTTCTGTCATTGCAGTGTGAATTGGCTGTAAAGCTAATGAATTACATGAACACACTAATAAATCTTTAAAAGCAAACTGCAGTTTTGATCAACTCTGTTTGCTGTCTAAAGTCAAACATTTCTTAAATCTCACCACACTAGAGATGACTGTCTACACTTTTATTACATCACGGTTAGATTACTGCAATGCACTTTACTGTGGCATTTTAAAATCTCAAATTTTTTGCCTTCTGTTGGACCAAAATGCTGCTGCGAGATTTATTTGTAATAGCAGAAAATATGTCCACATTACCCCTCTTCAAAGGGGCCTCCATTGGCTGCCCGTCCAATTCAAAATTGATTTTAAAGTGCTTTCACTGGTATATAAATTCCTTCATAATCTAGCCCTTATTACTCAGAGCTGTTGCATTTTTACACTCCCGTGAGATTTACAGATCCTGTAAGTGAGTAGATCAAGTCTTAGATCAAGTAAGAGGGGACTGAGCTTTCTCTGTGGTGGGTCCTTGGTTATGGAACACCTTGCCCCCTGAGATTAGAATGGCTCCATCACTATCTATTTTTAAATCACTCCTTATAACATACCTTATCAGTTTGTTTTTTTTTAAATATTATTTTAATAGTCGATTAATTTTTCTAGTCGTTTCTCTTGTCTTATAGGTTTTTATATTCTGTCTTTTTATTTTACTTTGTCTTATGTGCAGCACTTTGGTCAGTCTGACTGTTTTAAATGTGCTTTAAAAATAATTAAACTTGAACCTAAAATAATTGATAGATGTTTCCAAATTAAGTTACAGATTTCATTTCCTAATATAAACAACCAACCAATGCCAGGTTGGAATGGCAAGACATAACAGATTATTTTTTTGGTACACTGCAGATTTTCAACAAAAATAAATAAACTATTTGTGAAAGTGTAAACAAAACACTTCATGTGTATTTAATAGGGTATATGCATAAGTATGCGGAAGGACTTTTAATTTGTCAGCTCTTCCGGTGAACTGTGTGCCATTACATAATCTGAGCGTTTAAAGTCTGTTTTCTTTGAATATTTGAGTGATATACGTTGTAAATTGGATCTTAGAATGTACAAAAAGCACTGCATAAAATTAAACTTTCCTTGCCATGTCTTTAAAATATAAACATTTATTTTAACCTAGTATTTTCTATGAAGCTTCTGTGCTAGCCTGCTAATCCTGTTGTGTGCATGTAAACAGCTTTTTATCTTGTTTTATGTTTGAGCAACTAAATGGAAGCAAAAGTCTATTAAACTGATTACATTTTAATTGCATTACAATATTCATGCGGTAAAAGGAATGGAATAAAATGGGGAAAAAAAGTCATATTAACCGTTTACCACAAGTTTATCAGTATTGGAAGAAACACTGGCTCTTTAAATATCTATAATATAAGGAAGTGTTCATGATTATTACTACATAAAAACTTTATAGTATTGCCTAATATCAGCTACTTTTTCAATTAAGCATAAATAGCAGCAAATTACATTTATTTAGAGGGGGAAATGTGTAAAATAGAAGCTATCCCTCTTTGAATTTAATGTAAATAGAATCTGTTATTTATTGTGTAGTATCTATAACTATTTGCACAGTGACCCTGACAAACAAAACCCCATTTTGCACTACGTTTGTTGGAAAGTATTTCACAATTAGAAATGATAAAAATGATTAGCATCTGTGCAATTACCAAATATTTTCTTTTCCAG
Seq C2 exon
AGCAAGCCTAATATATATGCACCAGCATTCAGAAATGAGTGGAAAAACAAACCATCTCCCGAGACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202:ENSDART00000126950:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(80.4=84.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]