GgaINT0073746 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:34380909-34383572:-
Coord C1 exon
chr4:34383442-34383572
Coord A exon
chr4:34380968-34383441
Coord C2 exon
chr4:34380909-34380967
Length
2474 bp
Sequences
Splice sites
5' ss Seq
GTTGTATGT
5' ss Score
4.04
3' ss Seq
TTATTTTGTCGTCTTATTAGATT
3' ss Score
7.9
Exon sequences
Seq C1 exon
AGCACGCTGATGACTTGGACCTTCGTTCTGGAGATACTGTTTATCTTTTGGAGAGAGTTGATGCCAAGTGGTACAGAGGAAAATGTGGGAGTCGCACAGGAATATTTCCTGCCAGCTTTGTTAAAGTGGTT
Seq A exon
GTATGTGAGCTTTTGTATACTTTGCTAAATCCTAACGCGTTGGTTTTGTTGTTCTGTTTTATTATAGCTCCTGTGTTTAATTCCATTCACTATTTAGATAATCTCTTTTCCCTTTGGCATCACAGAAGACATATCAACTTGTTTGCATGATGTTAGAGAGATGCTTGATTTGGCAGAGCCAACTTGTGTTATGGGGATTATTTTGCTGTTAATTTCAAGCCAAGTGAGAAAATCATCGTCCTTACCAGATTCTTTCTTAACCTAGGTAGTTTATCTGGGTCTACAAGCAGATTATTTTTCACAGCTGCATACAAAAATCAGCATACAGTATGATGATTGCTTTTTGCCCTCACCTCAGCTTCTCCTCATATTCTTGTCCCCTTAAGCTATGCTGGAATCACCACTTCTGCACCCATGTAGTGAATCAGGCCAGGGCAGCATTTGAGCCCAGTAAAACATTTTTTCTTTATTCCCAGAATTCTTGTTTTCCAGATGGATCAGTTCGCCTACGTGGCTTCACAAATGGGTGTGCTGGCATAGTGAAAGGAGATTGTGCTATTGCAAATGAGCAGCTTAAAGCAATCCTGTTACTGAATGTGACATTTGCCAGTAAACTGCAAGCAAGAGGCAGGTGGTGTTTTGGTGCCTGACAGAAATGAGTTGAGAGGCTCAGCTTAAAAGAAATGCAATGTAATTCAATGCCTCAAAATCTAGATGAGATCTATTGCAAGCCTAACTTGGAGTTTGAAGTCCATTTTGTGCCAGTATGAAGGGTCATTGGCTATCCACCTCAGCCAAATGGGCATAGAAGAACACTAAGTTAACATTAGGATGCAGTGAAGGTGTATGACTGGCTGCTAAAGACAGTTAAAGTCTGTGTTGATCTGGGGCAGCTGGCAGAGATGAGAACTGCTGCTGTATGAAAAATACCATGTACTCAGTAACCATCACAGTATGTTATGTGGGGCGTCTGTTTAGTTTGTAGTGCATTACTGAAAGAGAATTTCAAAGCTTGGAAAGCACTGAAGAATAACAAATAGACCTTTAGTTAGTAGTCATAGAACTGTATTCAATTTGTTTTACAAGAAAGATTTTTTTTTTTAGCTACATTGAGTATTGTCTGCTACACAAAACAACAATTTAAAGCATTAATATTTTTGGTAGAACTGCTGGCATACAGATAAAGGGTTTTATGTTAAAGCAGTGGAATGGATATTTGGGGTCAAGTTCAGCATTGATATTGGCTGATATGACTTCTAGAAGATACTTCTAGACTTTTTTTTTTAGTTCTGAAAGCTGGATACCCTTTGAGTAGAAAATAATTGTTTTAGCAAAATTAGCAAAATGAAAAAAAGGGGGGAAGAAACGTAAATACAGCTTATTTGCTGAGAGAGTTTTCCTGAGAATTCATGTCAGCTTGCATCTTGATACGAGGTGTCCATCAGTACACTGTAGTGTGTTTTATGATATCAGGCCACACAGGAGCTTCATGTGTGGCGGATACCTAACAAACAGTAATACACTCTTATTTCCCATAGACACTTCAAAGCACCACCGATAGAAGCTTCTCTAGCAAGAGCAGCGAAAAGATTATTTGCCTGAAAATCATCTTTGTCTGAATAATTTGTCTGAAATTGACTGATTTCATCCAGTCCTTCACAAAAGCAATTAAACGCTTTTGTAGATGTGTATGGAACAGGCTTATGTGGTAGTGAGCTGTAGTCCAAATCTCCTAGCCAAGATCTCTAGGCTTGTAGGGGCATGTAGTCTTACGCTAAATATCACCAACCATCCTTCATATCGTACCAAAAGTGCAATTAAAGTCATCTTATGATAATGGACTTGAATGCTGTCTGTTTCACATATCCACGTATGGATTTTCTAGATGATATTTCTCCAATCCCTTCAATTAGCACATGGTAGCTATCTGCAACTGAGCTAAGAACGATTGTTTGTTTTTCCTAAATTAACCTTTCTTTTAATATACGCTGCCACTGCATGAATACTGAAGTGAGATTTAGGAGATGCCTGTTTGTTCTGAGTACAGCTGGCTACCAAAGCCCAGAAAAATGTGTAAACACTAATTTTGTCTGTTGTGATATGTTGCGCTAGCAAATGGTAAGAGAGCAATTACTAACTGAAAGTTTGGAGCTAAGTGCAACAACACGTTGTAGCATCCAGTCCCATTTTCTGTCAATCAGCCGGGCCGCAAGCCAGTTTATTAGAGCAGGCTAATAAAAACAAAAAACATGAAGTATGCGTGAGATTGAAAAATCAGACATGCAAAGCCAGAATCCACATTAACGTTGTCAGATATCAGAACGTTTCAATGACTATGTAGCATCACATGGAAGTTACAAAAGGAGTTGATGCTTAATGGAGAAATAGATGATTTTAACAAGTTCAGTATTTATGGCAGTTATATTGCCATAAGCTTTAAATTGAAGATTTTACTTATTTTGTCGTCTTATTAG
Seq C2 exon
ATTGATGTTCCAGAAGACGGCAAAAGGAAAAAAATACCCTGCTCCTCACAATCCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081:ENSGALT00000016385:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(80.4=84.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]