BtaINT0134526 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24755394-24755917:+
Coord C1 exon
chr2:24755394-24755446
Coord A exon
chr2:24755447-24755836
Coord C2 exon
chr2:24755837-24755917
Length
390 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
AATGTTGTCTTTCTAATTAGGTT
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTCTGATACCGCAACTTATAGGGGTTGCTCCAGAGAAGGCCATTAAACTGACT
Seq A exon
GTAAGTGACTGACTCATTGAATTTATGTCATTTGTTTAGATTATCACTAAGCCAAAAATTAAAACTGCTGCTGGGACTTCCCTGGTGGTCCAGTGGTTAAGCCCCACACTTTCATTGCAGGGCCCCCAGGCTCATTCCCTGATTGGGGAACTAAGATCCCTCATGCTGTGCGGCATGGCAAAAAATTTAAAAAACCAAACAAACCAAAACCGATGCTGCTAAGACTAGCACACTGTCGAGGCATTTGTAAAATTTTGAATTTATATGTAGACATCTGCTAATTTTAAATTTTATATGAGACAAGTATTTTGCTGACTTGGAAAACTAATAATGTACCACTAAAGGCAGTGATTGGGAGTTCTGGTTAATTAATGTTGTCTTTCTAATTAG
Seq C2 exon
GTTAATGATTTTGTCCGGGACAAATTTACCAGGAGAGATGGCTCCATTCCACTTTTAGCAGAAATCCTCGCTGGAGGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762:ENSBTAT00000022292:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(17.3=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]