RnoINT0136807 @ rn6
Intron Retention
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57897784-57898156:-
Coord C1 exon
chr3:57898104-57898156
Coord A exon
chr3:57897865-57898103
Coord C2 exon
chr3:57897784-57897864
Length
239 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GATCTTGTCTTCCTAATTAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTCTGATCCCACAGCTGATAGGAGTTGCACCAGAAAAAGCCATTAAGCTAACA
Seq A exon
GTAAGTTTCTTTGTCACTGAATTGATGTCATTTACATAGAATATTGTCCTGAAGCCAAGATAAGACCAATGCTGGTGAGATAGGAGCACTATATGGTGCTTGTAAAAATGTTCACATATATGTAGACAATTGGTAAAATTTTATCTTTATCATGAGACAAGTATTTTTGATAATTTGGAGATGACCAGCAGAGGAAATGCCAGGAAATTCTGATGAGCTGATCTTGTCTTCCTAATTAG
Seq C2 exon
GTTAATGATTTTGTCCGGGACAAATTTACCAGAAGAGATGGCTCCATCCCACTGCCTGCAGAAATTCTTGCTGGAGGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922:ENSRNOT00000036728:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(17.3=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATCCCACAGCTGATAGG
R:
AACCTCCAGCAAGAATTTCTGCA
Band lengths:
132-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]