GgaINT0049675 @ galGal4
Intron Retention
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17443524-17443845:+
Coord C1 exon
chr7:17443524-17443576
Coord A exon
chr7:17443577-17443764
Coord C2 exon
chr7:17443765-17443845
Length
188 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
ATGTATTGTATCTTCATTAGGTT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCTTGTTACCACAGCTGATAGGTGTTGCTCCAGAAAAGGCTATTAAGCTAACT
Seq A exon
GTACGTATCTTTTTTTTTTTCCTGACATTTTTTTGTTTGTTAACAAACACAGGATTTGTTTCCTAAAATGTGTGAAAGATGACCACTTACAAGCACTCTAATAAATATGGTTACAGATGTACTTGATATAGGTTAATAAGGAGGAAGGATACATTTATGTTGTATGTAATGTATTGTATCTTCATTAG
Seq C2 exon
GTTAATGACTTTGTCAGAGACAAATTTACTAAGAAAGATGGTTCCATTCCACTCCCTGCAGAGATCCTTGCTGGAGGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(17.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(12.1=44.4),PF0015322=Mito_carr=PU(14.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTACCACAGCTGATAGGT
R:
AAGGATCTCTGCAGGGAGTGG
Band lengths:
122-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]