GgaEX0014096 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17440165-17443845:+
Coord C1 exon
chr7:17440165-17440323
Coord A exon
chr7:17443524-17443576
Coord C2 exon
chr7:17443765-17443845
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGATGTCTTTGTTTCTATAGGCT
3' ss Score
9.58
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
Seq A exon
GCTTGTTACCACAGCTGATAGGTGTTGCTCCAGAAAAGGCTATTAAGCTAACT
Seq C2 exon
GTTAATGACTTTGTCAGAGACAAATTTACTAAGAAAGATGGTTCCATTCCACTCCCTGCAGAGATCCTTGCTGGAGGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_MULTIEX1-10/12=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.5=100)
A:
PF0015322=Mito_carr=FE(17.2=100)
C2:
PF0015322=Mito_carr=PD(12.1=44.4),PF0015322=Mito_carr=PU(14.3=48.1)
Main Skipping Isoform:
ENSGALT00000015535fB12014
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCAGTCGTAGGAGAGTTGA
R:
GGGAGTGGAATGGAACCATCT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]