DreEX0072229 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3806396-3809019:-
Coord C1 exon
chr6:3808861-3809019
Coord A exon
chr6:3806619-3806671
Coord C2 exon
chr6:3806396-3806476
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTCCTCCTACAGGTC
3' ss Score
13.67
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CCACCGGTGCTACAGCCGTGTACCCTATAGACCTGGTGAAAACCCGCATGCAGAACCAGCGCTCCACCGGCTCCTTCGTAGGAGAGCTCATGTACAAGAACAGCTTCGACTGCGCCAAGAAAGTCCTGCGATACGAGGGATTCTTTGGCTTTTATAGAG
Seq A exon
GTCTTCTTCCGCAGCTCATTGGAGTGGCTCCAGAAAAAGCCATCAAGCTCACT
Seq C2 exon
GTGAATGACTTTGTGAGGGACAAATTTACTACAAATGATGATACGATACCTTTGGCTGCTGAGATTCTTGCCGGTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'14-15,'14-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.5=100)
A:
PF0015322=Mito_carr=FE(17.2=100)
C2:
PF0015322=Mito_carr=PD(12.1=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACAGCTTCGACTGCG
R:
GGCAAGAATCTCAGCAGCCAA
Band lengths:
138-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]