MmuEX6102102 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71293360-71296823:-
Coord C1 exon
chr2:71296665-71296823
Coord A exon
chr2:71293672-71293724
Coord C2 exon
chr2:71293360-71293440
Length
53 bp
Sequences
Splice sites
3' ss Seq
GATTCTCTCCTTCTCTGCAGGTC
3' ss Score
11.85
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTGTGGGGGCCACTGCGGTGTACCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGTGGTACGGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTCGACTGTTTTAAGAAAGTGTTGCGCTACGAGGGTTTCTTTGGACTGTACCGAG
Seq A exon
GTCTGATCCCACAGCTGATAGGGGTTGCACCAGAAAAAGCCATTAAGCTAACA
Seq C2 exon
GTTAATGATTTTGTCCGGGACAAATTTACCAAAAGAGATGGCTCTATCCCACTGCCGGCGGAAATCCTTGCTGGAGGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'38-26,'38-25,41-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(54.1=100)
A:
PF0015322=Mito_carr=FE(17.3=100)
C2:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Skipping Isoform:
ENSMUST00000151937fB16815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCGGGGAGCTGATGTAT
R:
GGCAGTGGGATAGAGCCATCT
Band lengths:
141-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types