RnoEX6017381 @ rn6
Exon Skipping
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57897784-57901253:-
Coord C1 exon
chr3:57901095-57901253
Coord A exon
chr3:57898104-57898156
Coord C2 exon
chr3:57897784-57897864
Length
53 bp
Sequences
Splice sites
3' ss Seq
GATTCTCTTCTTCTATACAGGTC
3' ss Score
9.52
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTGTGGGGGCCACTGCGGTCTATCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGCGGCACAGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGTTACGTTATGAGGGTTTCTTTGGACTGTACCGAG
Seq A exon
GTCTGATCCCACAGCTGATAGGAGTTGCACCAGAAAAAGCCATTAAGCTAACA
Seq C2 exon
GTTAATGATTTTGTCCGGGACAAATTTACCAGAAGAGATGGCTCCATCCCACTGCCTGCAGAAATTCTTGCTGGAGGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922-'18-26,'18-25,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(54.1=100)
A:
PF0015322=Mito_carr=FE(17.3=100)
C2:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGGGGAGCTGATGTATAA
R:
ATTTCTGCAGGCAGTGGGATG
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]