GgaEX0014096 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19365259-19368942:+
Coord C1 exon
chr7:19365259-19365417
Coord A exon
chr7:19368621-19368673
Coord C2 exon
chr7:19368862-19368942
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGATGTCTTTGTTTCTATAGGCT
3' ss Score
9.58
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
Seq A exon
GCTTGTTACCACAGCTGATAGGTGTTGCTCCAGAAAAGGCTATTAAGCTAACT
Seq C2 exon
GTTAATGACTTTGTCAGAGACAAATTTACTAAGAAAGATGGTTCCATTCCACTCCCTGCAGAGATCCTTGCTGGAGGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.5=100)
A:
PF0015322=Mito_carr=FE(17.2=100)
C2:
PF0015322=Mito_carr=PD(12.1=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCAGTCGTAGGAGAGTTGA
R:
GGGAGTGGAATGGAACCATCT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event