GgaINT0049674 @ galGal3
Intron Retention
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19365259-19368673:+
Coord C1 exon
chr7:19365259-19365417
Coord A exon
chr7:19365418-19368620
Coord C2 exon
chr7:19368621-19368673
Length
3203 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGATGTCTTTGTTTCTATAGGCT
3' ss Score
9.58
Exon sequences
Seq C1 exon
CTGTTGGTGCTACGGCAGTATATCCCATAGACCTGGTGAAAACTCGTATGCAGAATCAGCGCTCCACTGGTTCAGTCGTAGGAGAGTTGATGTATAAAAACAGCTTCGACTGCTTTAAAAAGGTTTTGCGTTTTGAAGGCTTTTTTGGTCTTTACAGAG
Seq A exon
GTAAGTGAGTAAAATATACATATTGGCTTGGGGATTTTCTCCCTTTTTTTTAATAAGACTCAAGAACCAGTCTTATTGGAAAACTGTTAAACTTGATATAATTTACATTTTTGCTTCTGTCTCATAGAGCTGACTATTTAACTACCCTTGAGCACTGTTCATCATAATTGCTGGGAAAAACGAGGCCTTCTGTTGTTACTGATTGGCTTCTTGGTGCACAGATTTGTTTAAAGTCCTAATCTCTGTGGTGTGAGTGTTGTGGACAAGATTATCTCACAAACTGAGGTTTGTGATATTTGGCTGGGGGTGAACGTGAGGAATGGATTTTAGCGTGTGAAGAGCAAATATCTGTTTTACAGCAAATATTTTTTATTCAAACAGAGACAATAGTCATTCTGAAAGGTACTTGTTAACCTGGATGCCAGATTGCTTATTCCTCATACCTCTGCAGGTACTGGGACTACTGTGAGCAAGAAATTGCAGCCTGCAATTTATGTATCAGTTTGTTCTAAAATGCAGGTTAAGAATTCAAAGCAACTTCTTATCAGTTGCACCAGCTAGATAGAAAGCTATCTTTTTTTTTTTTTAGCTTAGGAGAAGGCTATGGAAGCATTTGTATTATATCAACAAGATAACGTACTTAAAGGGTACATACAGTAGTCAGTCATCTGATATTTATATTTAGTTGAATTCTCTATTTTTAATTGTTTTTTTCATGCAACAAAACACAATTTTTTTTTAAATTTTATTTTTTAATGTGATGGTCACAGACCATCTTTATGTTCTTTAGTATTACAGAGTGTTCTTTATGTTCTTTAGTATTACAGTGTGTTCTGTCCGTGAGGACAATGGCCCTTGCTAGTATTTGTTAAGAGCACTATCTGAGAAGTTTTTGCATGTGAAAGTCTATGGACTCTGACTAAGTTTTCAGTGATCTGACAGGACTTTGCAATGACAAATAAAGAGGAATAAATGAGCCAAAATATTAATGAGATAGCTGTTATCTCAATAAATTATGTTTTCCTAGTAAATTTCTTCCCTTTTTTTGTTGCTAGATCTTTCATTAAAACAAATAGTCCTTGAAGTTATATTCATGACTCTATTTTAAACTTTGTGATTTCTGCAGTTCTTTTTTATAGTACTGTTTTCTTTCTCTGCCCCTCACCCCAACGTGATTTTGCACAGTTGCTTCTAAAACCGATCACTTTTTATTTTTGTTGTCTAACTTTTGGCAAATGCTTTCCATAGATAAGTTAAAAACAGTGCTTCACACTCAAGGGGGAAAAAGTGCATGTTGAGGGAGAATAATGTCAACTCGTTAAACTTTTAAAAAATATGTTTAGTAATTGTCTTTTAAGATTGTTTATCATGAGAGGTTTGTGCAGCTGTTCTGAAAACGTTATCTTCAATGGTCAGCATGTGCTCATAGTATCAGATTATCTGCAAATGATTATTAAACAGAAACAACGGAAATATTTACAGAGCTGACTGTAACTGGAATCTTATATTTCTGAGTGGGATTATCCTAAATTGTATTCTAATATATAATGATACAATATAGTTCTTCAGTTTAAGAAATAGACTTGAATGGACATTGGAAAGCTCTTATTTTTAAGTGAAAACTTCTAATTTTTGGTCAGGAAAACTGTAATGCTTGTGAAACCTGACATCCAACTTCTGAACTAATTACGAAGTATTTTCTAAGCTCTCTTGTTAGACCATGCTGAATCCCAGGTTCTCTAGAATACAGAGTGTATGTGTGTCTGGGGTCTTTAGCTGCATATAAAGGAGGAGACAGTGTGGGGAATTGTCTTGTGGTGTTTTGTCTGGTAGTTTTCTTTTTTTTTTTCCCCTTCAAACTACAGGCACTGCAGAGCGGGGTTTTCTTTTTGTGGTAGATCAGAGACTCAGGCTGGGAGGGCAGTATTTCTTTTTGTTATTGTCAACCTTTCTTTGTATTTAATAACTACCTTTCCTCTGCATAGTAAGTCTGTACATCACACAGAAGATACTGTGTTGGAAGAAAACACTACACTGCATATATTATGTGCTGCACTTTCTATTTTGGTACCTTTACTCTGAGCTTCTTTTTAGGGAGGTACTATAAAGAATTTACAGATCTAAATAGTTTGGGGAATTTTGAAGATTGTTTTATGAATTTTAGCCATCATTTTCATTTAAGAGAGAGTGGGAAGCTGCACGACCATAGTTTTGTTGATGTCATTTGATGTTTGATATGATTAGTACGGGATTTCTTTATTTGTTAATTGGCAAACAGTTCTAACAAACTGATGTTCCCTAAGCATGGAAATGAGCACTTCTAATAAAAACAAACCCTTTAAGTTTTATGATTTTACACATAATACCAGAATTACTGTGCACAAATTGAATTGAAAGATAACAGATGCTGCTATAATCTACGTTAGGAAGTTGAGACTGCCACCTACTGATTTCTCTCTCTCTTTTTTTTTCTTAACCTATTAGCTCCTTGAAAGGTGTATGTACTGCTGTCAAAAGACTGCTCGTTTTGGTAGTAGCTGTTTTCCGAGAGCAGAGTCTTTCAGAATTGGCTTCTGCCAACTGATAATTCCTCTTGGCAAGCTTAAAAAAAAAAAAAAAACAAAAAGTAAAATAAGTAATTGTAAGAGAGTTTACAGAAGTTTATGTTGGACTCAACTAATGAGAATACTTTACATCATTAGTTGACTGGAGCCTTGAGAAATCTCAGGTTAGTGGTAGAGGTTAGTTCATAATTTATCATAGTTGTGTGTATCTCTCATAATTAATCTCCTGTTTTAATTTCAAGATTTATGGGAAAATAATACGAAGGGGCTAAAAAACTCTAAAGTCAAATTAATCCTTATGTAAATAAACATATAATGAGGTTCATTTAGTCTTTTACTTTTTTCTTTTTTTTTTTGTGTACAGCAACTGTATCAGACTTGACTTGGTTGTGGAAGGTGGATACATTCACCCTTTTCATTACCATTTTCAACAGAAATCTTATTGTAAAATCCTATAGGTATGAAAATCCAATGCTCTAGCAGCCACACATGCATAAATGCCATCTACCTCCTAGGGTAACTGTCACTCACTTCAAAGGAAATCCCATGTGCAGAAAGACATTTCTGTAGAGCTCTTATAAAATACTAGTTTCTTTATTAGGAAGATAATGTTGCCTTATGATGTCTTTGTTTCTATAG
Seq C2 exon
GCTTGTTACCACAGCTGATAGGTGTTGCTCCAGAAAAGGCTATTAAGCTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.5=100)
A:
NA
C2:
PF0015322=Mito_carr=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]