HsaINT0151625 @ hg19
Intron Retention
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:HGNC Symbol;Acc:10982]
Coordinates
chr2:172666734-172670007:-
Coord C1 exon
chr2:172669849-172670007
Coord A exon
chr2:172666787-172669848
Coord C2 exon
chr2:172666734-172666786
Length
3062 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GATTCTGTCCCTTTACCTAGGTC
3' ss Score
9.56
Exon sequences
Seq C1 exon
CTGTGGGAGCCACTGCAGTGTATCCTATAGATCTGGTGAAGACCCGAATGCAAAACCAGCGTGGCTCTGGCTCTGTTGTTGGGGAGCTAATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTCTTGCGTTATGAGGGCTTCTTTGGACTCTACAGGG
Seq A exon
GTGAGTAAGCAAATCCCAGCTGCTGAAGTTAGTGATTTGATCTCACCAGCAGCAGATTTTAACTCACTAATTATGGAAGCCAATATGTAGTATGCCTAGCCAGACTAGGTCTGTTTCTCTCTTTTTATTTTCTCTTTGCTCATTTCCCTTTTTGCATTCTTTCTGGTGATTAGCAATATTAATCTGCAAATAAGGTCTTCATTTCTTCTTCTTGTGGTTTATATTTCTTGGTGTCCAAATTATGTGTTTGTCCCAACATGGGTCTATGTCACCATGCTCCTACAAACCAAGGCACATATCTGCAGGTGGAATACAAGGATGATAGTTAAGAAATATAGAGCTGCTTTTCTCAAAGAATTAAAGAGGAGAAATACATCTCTTTCCTGTGAAAAAGAATCCAGGTTACCACTCAAAGATGAGTTTACCCTCCATATATTTATTTCAACTGAAATAAATATCAAATGTTTTTGTCTCTTTCAGGGACCATTTATAAATTTTTTCCAATGAGCCATCTGAAGGTTTAAAAAAAAAAAAAAAAAGGAAAACCCTTTGGTTCCAAGTCTAATTCTTGCTTCTTTCCCCCACTTAGCTCAGAGGTGTACAGTCAAAACAGAGAGATTTTCTTTCGCAGGGAATGTTAGCAGCCACTCTAGACTGAGCACAGTGCAGTTGGCATCAGAGGCAGCACTGCGCCCCATGCAGAATTTTCCCCACCCCCCGTTGTCTTTGTAGGAACTTGTCTCTTTGGAGAGAGAATGACTTTCATGTATGTGTTTTCACATTAGAATATAGGGTTTCCTTTGGGAGGGAGATTAATTTTTTAATCTCTTTGGGCGCCACTTGGGATTCTATGAAAATACTCTCTACATGCTCAAGTCCATGCCATTTATGTAATTTACTGTACTTGTTTGTTTGCACATACAAGCTCATTAATCCCTAGCCTATTCTGAGCTCTGTTGAACTATTTGGCTTAGAAATCTTCCTAAGAAAGACTGGGCCCGAACAGAGCTTTATGCTCATGGACAGGAGGAAAAAAACACCGCTGGTTAGCATTATATACAGGTATTCAAGCAAAAAATATAACTCCGATAAACTCATAATTGAAGTAGAGGGTCACAAGGATGTTCATTTTTAGCATTATATATAGAATAATAGGAGAGAGTTATTCCGAAATCAAACTAGGCTCAAGTACCCTGCTCTTGAGAATGAATGTGATGAGTTTTCCTCAAATATTCAGAACTGTAGTCTCTTTGAATTCCACCTGTACAGCATGTACCCTGTGGAAAGGCGTACAATATCCAGAATGCAGACCTTTCCATGTGAATGCTTGTTTTAACTGATTAAACCCTGCATATCCAGATTTTATTTAATGGGGAATCAAGGTTGAGTGGCATTAAGGTTGTTTTTTTCCTTGATATCTCCAATATTTCTTTGTTGAATAATGACCTTTCTCCTCTTTGGTATACTTTTAAATTGCAAAGAAAATGTCCCCTATTAAAAGGAACCTAGATATTTACTGCATAGTTTAGCCTTCTCAATGGATAGATGCTTACAGAAGATTTCATTTGAGAGAGATGTCATGTTTATTAAATGGATGCAATATAGCAAGTAGGGGAGGGGATTGTTGGTTTTATTCAGGATGTAAGCTCATAAAAGCAGTTCTTTAAATGAGAGACTTTTGTATTAGGGAGAAGATTGTAGGAGTCCTGTATGTGAGCACTATGATTATTGAGATTGTCATATATTGCTTGCAACTGGTCCATTATTCTGTCAGATGATTGACAAAATTGTTGACAGATTAGCTAAATTTCTTCGCAGGCAACAATGATAAAATGACACAAATCAGTACTTTATTAAATTCCATGAGCCTTATTGAGGCGAGTTGTAAAACAAATATGCATGCTGACATGGTTGTATGGGAGTTAGATTAAAAGTAATAGAGCCTGATAATCACGAGGGTTAGAAAGTTAATACTGCCATCTGCTGATTTGTTCTTTTAAATCAGTCTGCTACGCATGAAAGGTGTGTGAGGCTTTGTGTGTATCATTGATAATTCAGCCTGACTGACAGTAGCCTATATGTATGATTACTTGTGGCTCTCAACTTATGGAACTCAGCAGTATCCTCAAAGCAGGCTTAAGATCAGCAGTCAGCAAGCAGGCAAACACATATATAACTCCCCTTTGGCTGGATGATTTAAAGGATATAAAATGTTTATTGTTAGCATCTTTAAAAAATGTATGCAAAAAAGTATGCTAACAATTTGGATAAGCTGTGTGCTTTAGAAAGCTGAGCCCAACAGATGTTGAATTGTTTATTTTTTTCTTTTCCAGTTTACAACCAGCCTGGGGAATTTAACTTTCTAAGGATTATGATTTCCTTTGTTTTGAGGGGATTCTTTTAAAATGTCTTAAGCTTGACATATATTAGTCAATAAGAATACAACAGGCATATGTTTTTGCTTATAGGAGATACTCGTTAAACAATACTTAAAACTGCATTTTTCTTTGCAGTTTTGGCTTCCTTTTAAATAAATGAATATTGAATGCTGTGTTTCTCTGAAGAGAAGATTATGGGAGTTAGTATTCTATAATAACGAAGCCACTGTATGCCATTATGTAGGTAGCAAAATCTGGGTATGCTTAACAGCATGCTTTTCAGAGCTTTTCCAAGTGTACAGTATCTGTGTATGTTTATATGTTGTTGGTTGTAATAAGGGAGGGAATTTGGTTACATTGTTATTGGCAGTGTTCCCAGAATAGAGAAGACGCATGGCTCCGTTTCTTCTTCATGGACTTTTTGGGAAGTGTTGGATAACTAGGCTTTAAAGTAAGCATGCTTAAGAAGAGGATTTATAGCCTCAAGAAAACGTGACATTATACTGCATTTGTAAATAATTATTACATATGTATACAGAGTTTTAAGGATAATCTTTTTCCCATTTTAATGAAAACTCTGCAATGTTTGATGGGTAAATAATATGGGGGAAACTCTTTGTTGCTGGGCTTGTGTATTCATGTCTGGTACAGCTATATTGCTGATGATTCTGTCCCTTTACCTAG
Seq C2 exon
GTCTGATACCACAACTTATAGGGGTTGCTCCAGAAAAGGCCATTAAACTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840-SLC25A12:NM_003705:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(54.1=100)
A:
NA
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)