RnoINT0136806 @ rn6
Intron Retention
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57898104-57901253:-
Coord C1 exon
chr3:57901095-57901253
Coord A exon
chr3:57898157-57901094
Coord C2 exon
chr3:57898104-57898156
Length
2938 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATTCTCTTCTTCTATACAGGTC
3' ss Score
9.52
Exon sequences
Seq C1 exon
CTGTGGGGGCCACTGCGGTCTATCCCATAGACCTGGTGAAGACCCGGATGCAAAACCAGCGCGGCACAGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGTTACGTTATGAGGGTTTCTTTGGACTGTACCGAG
Seq A exon
GTGAGTAAGCGCAGCTCAGCTGCTGACGTTGGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCATCAGCAGAGTTTAACTCTTACGGAGACAGATTGGGGCTGTTTCTTTTCCTTTCCTCCCCTCTTTGCTCCTTTTCCTGTGTTGCATTCTTTCTGGTGACTAGCAGTATTAGTCAGTAAACAGGTGTTCCTTTCTCCTTCCTGCTGCTTGTAATTCTTGGGATCCAAATCCTGCGTCTCTCCTAACATGTGTTTGTGAGCCCCTCTGCTCCGAGAGGTAGAAGAGACCCATATTAACACCAATTCCATGTAAAATCCAAGCCAGGCGCTACTTGAAAGTGAGTTTCCCCTGTCTATATACACTTGTTTCAGTGAGAAGAAATGCCAATTAAAAAAATTATTTTATTTTTGTCTTTTCCAAGGAGACCCGTAATAAGTCTTTTCCAGTTAAGTCATCTGAAGTTTTAAAAGGCAGGGAAACCCTTGGCCCTCAAGCTGCAGCTGACTCCTTTTCTTCCCAGCTCTGGCAGAGCTGTCTTCTCGCAGTGCCTGCCGCCAAGCGCCTGGCTGTCGCATCCTAGGCTGCTGCCCTGTGCAGAATTCTCCCCGGCCCCAAAAGGCTTTGTAGGAACTTGTCTTCTTAGAGAGAGGGTGCCTTTCATCTACATGTTTTCACGTTAGAATTTCGGGTTCCTTTGCAGGGGAGATTAATTTTTTAATCCCTTTGGGCGCCACTTGGAATTCTTTGAAACACACTTAACATGCTCTGGTCCCAGGCACTTATGTAATTTACTGTACGTGTTTGTTTGCGTTCCTGGGTTTATTAATCCCCAGTTCTGTCCAACTGTTTGGCTTAGAACTGTTCCTAGGAAAGAGAGACGGATTGAATAAATGGGCAGGAGAAGAAACACTTGTAGTTGGTGTCATATTCAGTCACTTGAGTGGACCCATGTAGAGTCAAAGACGACCACTTGCATTTTTGCTGTAGCTGCTGTGTATGGAGTAAATAGGCCCAAATGCCCTGCTTCTGAGAGAGAATATAATGAAGTTTCCTCATATATTCAAAACGCTTTGGCTCTGAAAATCCAGGTTGTATAACTTGTATTACAGGGGCAACCGTGGCCACTGCCTGGAGTATCTGGAGCTGGCAACGCAAAAACTTGTTTTAAATGGACTCAGCTCTTCTAGCTAGATCTCACTTAAAGGGGAATCTCGGGAGGGTAGCACTAAGGTGGTTCATTTCTTTGCCATCTCCCATCTTTCATTATTGGACAAATGACCTTTCTCTTAATTAGTATGGTTTTATGTCACAAAAGGTGTCTATGAAGGACCCTCAGAAGGAATCTAGCTATGCTGTGCATAGCCTTCTCCATAGATAGGTACTTCTGGATTTTGCTTGGGAGAGCTCTCCTATTCATGAAATGGGTGCAATATAGCATGCAGGGGAGGATGCCGCTGACTTTCTGCAGGATCTGAGCTGATAACATGGGTCCTTTAAATGGGAGACTTTTGTATTAGAGAGATGATGGTAGGAACCCTGCCTGGGAGCACAATGATTGTTGAGACTGTCATATGTTGCTTAGAACTGGCCCATTATTCTGTCAGATGATTGACAAAGTTGTTGACAGATTAGCTAAATTTCTTTGCAGGCAACAATGATAAAATGACAGAAATCAGTACTTTATTAACATTCCACGAGCTTTAGGGCGGAAAGTTATAAAACAAATACACACGCTGACACCGGTTCTCTGGAGCTAGATTAAAAGAAATGGGGGCTGATGATCAGGAAGGCAAGAAAGTTAAGACTGCCCTCTGCTGATTTATTCTTTTCAACCAGTCTGCGGCCCGTGAAAGGTGTGCGCAGATTTGTCTGATAATTCAGTTTGACTGACAGCAGCCTGTATGCACGCTAACTTGCTGGCTCTCAACTTCTGGAAAAATCACTCATCAGCATCCTCCAAAGAGGCTTAAGATGAGAGCAGCAACAAGCTTGCAGACTCACATGTCGCTCCCCCTGGACTGCCTGGTTTTAAGGCTATAAGATGTGTTTATTGCTAGCTTCTCTGAAAAGAAATGTATGCAGAAAAGAAAGTATGCCAACAACCAGGTGAAGCTTCACGCTCTGGAAAGCTGAGCTCCGTGGGGATCTAAGATGACTGACTGTTCCTCTCCAGTTTGCAGCCAGCCTGGGAAATGTAGCCTTCTAAGCCTGATGATTTCTTTTGTCCTGAGGAGTCGTTTTAAAGGTCTTAAGCTTGACATATATTAGTAAATAAATATATAATTGGCACATATTTTCATATGGACCGATACTGAAAGCTGCGTTTTGCTTTACAGTCACGGCTTGCTTTCTTTTAAATAAATGAGTGCGGGGGCAGAATGTTGGTTTTCTCTGAAGAGAAGATAATGGGAGCGGATACTCAGTAGCAGCAGCTCTCCTTTGTGCTGTAAGGAGTGTACACTGTAGCAAAACCGGGCTGTGCTTGAAGCACACAGCCCTGAGCTTCTCTCAGCCCACAGCACTGGCTTCTGTAACGTGTCTATGTGCTGCTGTTGAGAATAGGAGGAAATTTGGTCACTGAGTAGAGAAAACCAACAGGCTCCATTCTTTCCTTGTGTATTTGTGTAGAGACTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAGGATGTTAAAGAAAAACATTTTTAGCTTGGAGAAAAATGGCATTATATTTGACTGGTAAATTGTACACACACACACACACACACACACACACACACACACAGAGTTTTTAGGATAATCCCCACCCCACCCCATCTAGATGAAAACCTTGAGATACTTGGGTAACTTAGAGGAAAGCAGTCCTTGTTAGGCTTGTGCATTCACTCATAGACGTCTGTTTTGCAAATGATTCTCTTCTTCTATACAG
Seq C2 exon
GTCTGATCCCACAGCTGATAGGAGTTGCACCAGAAAAAGCCATTAAGCTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922:ENSRNOT00000036728:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(54.1=100)
A:
NA
C2:
PF0015322=Mito_carr=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]