BtaINT0134642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98757021-98757627:+
Coord C1 exon
chr11:98757021-98757173
Coord A exon
chr11:98757174-98757519
Coord C2 exon
chr11:98757520-98757627
Length
346 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGTTGGCTCCTTATTCCAGATC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTCCACGCCTCCCGCAGCAACAACATGTGCATCGTGGGTGGGTTCACGCAGATGATTCGAGAAGGAGGGGCCCGATCACTCTGGCGGGGCAATGGCATCAACGTCCTCAAAATCGCCCCCGAGTCGGCCATCAAATTCATGGCCTACGAGCAG
Seq A exon
GTGAGGACCTGGCTCTCCAGGAAGAGTCGCACCTCGGCAGCTGCATCCTGAGCACCCCCTGGGACAAGGTCCCTGCCCTGCTGATCCCCTGGAACCCGGAGCCAGGCCTTGAACCTGAGGGACAGCCAGGCCAGGTGGGGGGTGGAGAGGCCTGGGTCTGACCCCTGCACTGCCCCACTAGCCTGTTCCACTGGGGGCCAGTGCCTGCCTTCTCTGGGCAGCATCGAAAGTCCCAGGGACACCAGGTCTCGGTTAAACCTGATCGGCTCCGGGAGGACGGGCGGGGCGGCAACAGGTGTGCTGGTCTCCAGCAGAGGGGTTTCAGTTTGTTGGCTCCTTATTCCAG
Seq C2 exon
ATCAAACGTCTCATTGGGAGTGACCAGGAGACTCTGAGGATTCACGAGAGGCTCGTGGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGTAGTATCTACCCGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGCAGCAACAACAT
R:
CTCCATCGGGTAGATACTACTCTGG
Band lengths:
254-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development