HsaINT0151761 @ hg19
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130868008-130868536:+
Coord C1 exon
chr9:130868008-130868160
Coord A exon
chr9:130868161-130868428
Coord C2 exon
chr9:130868429-130868536
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGTTTGTTCCTGGTTCTAGATC
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTCCATGCCTCCCGCAGCAACAACATGGGCATCGTTGGTGGCTTCACTCAGATGATTCGAGAAGGAGGGGCCAGGTCACTCTGGCGGGGCAATGGCATCAACGTCCTCAAAATTGCCCCCGAATCAGCCATCAAATTCATGGCCTATGAGCAG
Seq A exon
GTGAGGACCCAGCTCCTCAGGAGGGTCACCGGCCAGTGGCTACTCACTGCCTGGACTTGCTGGCTTTCCCTGGGCTGAGCTCCCTGACACTTGGAGCCAGCCGTGGTACCCCAGGGACAGCAGGGCGAGGCAGGAGGCCCAGGCTCACCACGAGTTCCTTACATTTCTGGGTAGCATAAAATGTGCCGGGGACTCCTGGAAGGGAGGGGCAGCAGCAGGTGCCCCAACCTCTGGGTATATCAGGTGGTTTGTTTGTTCCTGGTTCTAG
Seq C2 exon
ATCAAGCGCCTTGTTGGTAGTGACCAGGAGACTCTGAGGATTCACGAGAGGCTTGTGGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGCAGCATCTACCCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-SLC25A25:NM_001006643:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGCAGCAACAACAT
R:
CCATTGGGTAGATGCTGCTCTG
Band lengths:
252-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)