RnoINT0136934 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11445222-11445738:-
Coord C1 exon
chr3:11445586-11445738
Coord A exon
chr3:11445330-11445585
Coord C2 exon
chr3:11445222-11445329
Length
256 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGTTTTTCCCTATTTTAGATG
3' ss Score
11.72
Exon sequences
Seq C1 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCATAGGTGGATTCACACAGATGATTCGAGAAGGGGGCGCCAAGTCCCTCTGGAGGGGCAATGGCATCAATGTCCTCAAAATTGCCCCTGAGTCAGCCATCAAGTTCATGGCATATGAGCAG
Seq A exon
GTGAGGACCTGGGAGAGGGTGGCCAGCTGGCAGCTGCTTATGCAGGTCCCTGAGGCTGGAGCCAGTGTTTGTACCCAAAGGATAGCAAGATCGATGGCCTGGGCATGACCCAGCTCTCTTACTGCCTTCTTCCATCAGGGGTCAGCATAGGTAGCTTCAGGGTCACAGGTCTCACCCAGAGCTGGTTGTAAGAGGAAGGGCGGGGCCGGAAGTGCTGTGGCCCCTGGGTGCATCCCTTTGTTTTTCCCTATTTTAG
Seq C2 exon
ATGAAACGCCTTGTTGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTAGTGGCAGGCTCCTTGGCTGGGGCCATTGCCCAGAGTAGCATCTACCCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGCAGCAACAACAT
R:
CCATTGGGTAGATGCTACTCTGG
Band lengths:
252-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]