BtaINT0134645 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98758481-98760803:+
Coord C1 exon
chr11:98758481-98758631
Coord A exon
chr11:98758632-98758733
Coord C2 exon
chr11:98758734-98760803
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGTGGCGTCTCTCACTGCAGCCT
3' ss Score
6.91
Exon sequences
Seq C1 exon
ACACTCAAGAATGCCTGGCTGCAGCGCTATGCAGTGAACAGTGCAGACCCTGGTGTGTTTGTGCTCCTGGCCTGTGGCACCATGTCCAGCACCTGTGGCCAGCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCCCAAG
Seq A exon
GTAAGGCCAGTCGGCCCCCAGGGCCCCATCTCCCCTGGGGCAGGTTGGGATGTAGGGAGGAGCCGGCGAAAGGCCCCTGACAGGTGGCGTCTCTCACTGCAG
Seq C2 exon
CCTCCATGGAGGGTGCTCCCGAGGTGACCATGAGCAGCCTCTTCAAACAGATTCTGCGGACCGAGGGGGCCTTCGGCCTGTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCGGCCGTGAGCATCAGCTACGTGGTGTACGAGAACCTGAAGATCACCCTGGGCGTGCAGTCGCGGTGACAGGCGGGGGGCCAGCCGCCCGTGCAGACTCCCTGATCCCGGGCTTCCAGCCCTGGGATGTGTAGCCATCTCATTCTGTGAATGTACCAACACTACGCTGACTGAAGCCAAGCTGTGAAAACCCTGGGGTGCGACCGCAAGTTGGGGGGACAGAGCTGGCAGGCCACCGGGTGCGTCCTGCTGACCCCGGCCGACCCGCGTGTCCATTCCAGGGAGGACCTGTGAGTGTTCCTCAGGGCCCAGGGCTCAGCAGGACATGGGCCCGAGCGCTTGGGGGCTGAACGCTGCCCAGGGGCGCCTGCGGAAGAGCAGGGCTGGGAGGCCGGCTTCATCCTCCCATCGCATCCTCGCAGCTGGACCATTGGCGTGGGCCGTCTTCTGGCCTGCTGCGCGTCTTCCCCGGGGGGCCCACCTCGCTTCCTTCCTCGCTGCTGTTTTCAATGGTAGGAGGAGGGCCCCCGGCCCTCTCCCCACACTGCTTCTCTCCCCTCAGTCAGTGGGGAAGGGTAGTTGTACCTGAAACCTGAGCCCAGATTCCCAACTGGCCGCTCTGCCGCTGGCTGGCTGGTGCAGGGAAGAGGGCTTCCAAGCTGCCCAGCAGGTGGGCACCTGGATGCACGTGTGCATGATGGGGGCCAGGCTGCCTGGCGCATGGCTTCACAGGTCCTGGACCCCAGAGAGCCTCTGCTCCCTGCCGCTGAGGGGGGCTCGTGAGGCTCTGAGCTGGGCCCGGACTCTGTCAGGACTGGCACCAGCTCAGAACCAAGTCCCTCTGCCCCGCTGGCATGAGGGCAGTGGGGATCGTGTTGAAGCAGGAAGGGCCATGTCTGCCCTGCGTCTGCATGCCCTGGCGAGAGAAGGAAAAGGTGTTCAAGGCCTTAATAATTACGTATCATTGGAAGAAGGGTTTTGTTCAGAAAGAGAAGCTGAACAAACGTGCAGGTTCTGGTCTTCCAGAAGGAAGACAGAGAGCCGACGGCTTGGCTGACCTCATTTAAGTCTGTTTCTGATGCCCCTGGGGACTCGCGTCCGATCCCCACGGGGCCAGGTGGGACCACTTCACATTCCGCTGATGCAATGTGTCACACTGCTTGGAGCCTATTTATTTTGTATTTATTTGAACAGAGTTACGTCCTAACTATTTTTATAGATTTGTTTGATTAATAGCCTGTCATTTTCAAGTTCATTTTTTATTCATATTTATGTTCCTGGTGGATTGTACCTTCCCGGCCCCCGTGAGGTGGGGTGGGGGGAGGGACCAGGGGGCCGTGGGCGTGACCCTCGTGCCTGTCCAAAGAAATTCCTCTCTGAACTGGTGACAGAAAAAAGGCAAAGAAGGCAGAAAGGCCCTGACCGCAGAGAGACGGGCCCTTGGCAGGTCGGGGGGTGAGGGGGCCAGCACCCAGGAAGCCTTAGGAGTTGAGGGTTTGATCAGGGGGCGGGAAGAGGGAGGGAAACTCCCACTCCATTGAAGATGGAAGTCCAAATCGTTTCTTGGACTGGGGAGGGATTTCTTTATTTTCCCCCCTTTTTGAAGGATAGGGCAGTGAGGTACCTATCACTGTGAGTTTGGGGGTGAGGGCCGGAGGAGAAGGCCACCAGCTCCCCCCGCCATCCCCTGTGAAGCGGGCTCCCTCTGTCCTGGCCACCACCCCGCAACCCGCTCCTCCTGCTCAATAATGCTGGTCTCTGTGCAAGTGCACGGCCATATTTCCATTCACCAGAATGGCCCGATAAGGACAATTCAAATAGGATGCAAAGATCAATGCAAAAATTACTGTTATATATAAATAGAGTTATAACTGGAATTGGTGACAAAGCAAATTAAGAAAGAATTGGGAGTTGTCATTTAAAACAGCCTTCTAATAAAGTTGTTTAAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGGTGTGTTTGTGCTC
R:
CGTACACCACGTAGCTGATGC
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development