DreINT0150015 @ danRer10
Intron Retention
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31205994-31206460:+
Coord C1 exon
chr5:31205994-31206144
Coord A exon
chr5:31206145-31206254
Coord C2 exon
chr5:31206255-31206460
Length
110 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ATCTTTCATTTGTCCTCCAGCTT
3' ss Score
8
Exon sequences
Seq C1 exon
ACACTGAAGAACTCATGGCTGCAGAGGTTTGCCACAGACAGCGCTGATCCGGGTGTGTTTGTGCTGCTAGCTTGTGGTACAATGTCCAGCACATGTGGACAGTTAGCGAGCTACCCGTTAGCCTTAGTGAGGACACGCATGCAGGCGCAAG
Seq A exon
GTCAGTCTTCACAACAGACAAGACTTGTTTACTGCTAGAAACCCTCAATGCCTAATTCTATAGATCTCCTGTCACCGACATTTACCGTTCATCTTTCATTTGTCCTCCAG
Seq C2 exon
CTTCTCAGGAAGGAAGTCCTCAGATGACCATGTCAGGACTCTTCAGACACATTGTACGGACAGAGGGCGCTATTGGACTCTATAGAGGCTTGGCACCCAATTTTATGAAGGTCATCCCTGCTGTTAGCATCAGCTATGTGGTCTATGAGAACTTAAAGATCACCCTTGGCGTTCAGTCCCGGTGAGAGAAACCTGAGCACTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468:ENSDART00000098163:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.5=70.6)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.5=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATGTGGACAGTTAGCG
R:
GACTGAACGCCAAGGGTGATC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]